ENSGALG00000003385


Gallus gallus
lsmdomainmrnaLSM4spliceosomalcomplexassemblysmdsnrnpprocessingubindingeukaryoticarchaea-typesuperfamilylike-smcontainingproteinsplicingviaspliceosomenuclear-transcribedcatabolicprocessrnacytoplasmicbodyp-bodycytosolmembraneprotein-containing

Features
Gene ID: ENSGALG00000003385
  
Biological name :LSM4
  
Synonyms : LSM4 / LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated
  
Possible biological names infered from orthology : Q9Y4Z0
  
Species: Gallus gallus
  
Chr. number: 28
Strand: 1
Band:
Gene start: 3982169
Gene end: 3987362
  
Corresponding Affymetrix probe sets: Gga.6010.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000005338
Ensembl peptide - ENSGALP00000056215
NCBI entrez gene - 420128     See in Manteia.
RefSeq - XM_418245
swissprot - A0A1D5PTG8
swissprot - E1C4H6
Ensembl - ENSGALG00000003385
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lsm4ENSDARG00000023852Danio rerio
 LSM4ENSG00000130520Homo sapiens
 Lsm4ENSMUSG00000031848Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR027141  Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3


Gene Ontology (GO)
nitrogen compound metabolic processcellular component organizationcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processcellular component organizationcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processcellular component organizationcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processcellular component organizationcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processcellular component organizationcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processcellular component organizationcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processcellular component organizationcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processcellular component organizationcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processcellular component organizationcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processcellular component organizationcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound menitrogen compound metabolic processcellular component ocellular component organizationcellular component bcellular component biogenesiscellular metabolic pcellular metabolic processprimary metabolic prprimary metabolic processorganic substance meorganic substance metabolic processcatabolic processcatabolic process
organic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingheterocyclic compound bindingprotein bindingprotein binding
cellprotein-containing complexorganellemembranecellprotein-containing complexorganellemembranecellprotein-containing complexorganellemembranecellprotein-containing complexorganellemembranecellprotein-containing complexorganellemembranecellprotein-containing complexorganellemembranecellprotein-containing complexorganellemembranecellprotein-containing complexorganellemembranecellprotein-containing complexorganellemembranecellprotein-containing complexorganellemembranecellcellprotein-containing complexprotein-containing complexorganelleorganellemembranemembrane
TypeGO IDTermEv.Code
 biological_processGO:0000245 spliceosomal complex assembly IBA
 biological_processGO:0000387 spliceosomal snRNP assembly IBA
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0000956 nuclear-transcribed mRNA catabolic process IEA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0033962 cytoplasmic mRNA processing body assembly IBA
 cellular_componentGO:0000932 P-body IBA
 cellular_componentGO:0005688 U6 snRNP IBA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0032991 protein-containing complex IEA
 cellular_componentGO:0097526 spliceosomal tri-snRNP complex IBA
 molecular_functionGO:0017070 U6 snRNA binding IBA
 molecular_functionGO:0042731 PH domain binding IEA


Pathways (from Reactome)
Pathway description
mRNA decay by 5 to 3 exoribonuclease


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr