ENSGALG00000004133


Gallus gallus
splicingSRSF10rnaviamrnaspliceosomeregulationdomainbindingrecognitionmotifnucleotide-bindingalpha-betaplaitsuperfamilytransesterificationreactionssplicesiteselectioncytosolictransportnucleoplasmcytosolnuclearspecknucleicacid

Features
Gene ID: ENSGALG00000004133
  
Biological name :SRSF10
  
Synonyms : serine and arginine rich splicing factor 10 / SRSF10
  
Possible biological names infered from orthology : O75494 / Q9R0U0 / serine/arginine-rich splicing factor 10
  
Species: Gallus gallus
  
Chr. number: 23
Strand: -1
Band:
Gene start: 5630108
Gene end: 5640728
  
Corresponding Affymetrix probe sets: Gga.17360.1.S1_at (Chicken Array)   Gga.7518.1.S1_s_at (Chicken Array)   Gga.8379.1.S1_at (Chicken Array)   GgaAffx.11423.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000056757
Ensembl peptide - ENSGALP00000006566
NCBI entrez gene - 419689     See in Manteia.
RefSeq - XM_015297679
RefSeq - NM_001030906
RefSeq - XM_015297676
RefSeq - XM_015297677
RefSeq - XM_015297678
RefSeq - XM_015297675
RefSeq Peptide - NP_001026077
swissprot - Q5ZMR4
swissprot - A0A1D5PUZ9
Ensembl - ENSGALG00000004133
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 srsf10bENSDARG00000086411Danio rerio
 O75494ENSG00000188529Homo sapiens
 Q9R0U0ENSMUSG00000028676Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
nitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component organizationcellular component biogenesisestablishment of localizationcellular localizationnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component organizationcellular component biogenesisestablishment of localizationcellular localizationnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component organizationcellular component biogenesisestablishment of localizationcellular localizationnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component organizationcellular component biogenesisestablishment of localizationcellular localizationnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component organizationcellular component biogenesisestablishment of localizationcellular localizationnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component organizationcellular component biogenesisestablishment of localizationcellular localizationnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component organizationcellular component biogenesisestablishment of localizationcellular localizationnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component organizationcellular component biogenesisestablishment of localizationcellular localizationnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component organizationcellular component biogenesisestablishment of localizationcellular localizationnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component organizationcellular component biogenesisestablishment of localizationcellular localizationnitrogen compoundnitrogen compound metabolic processcellular metabolicellular metabolic processprimary metabolicprimary metabolic processorganic substanceorganic substance metabolic processcellular componencellular component organizationcellular componencellular component biogenesisestablishment of establishment of localizationcellular localizacellular localization
organic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingheterocyclic compound binding
cellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellcellorganelleorganellemembrane-enclosed lumenmembrane-enclosed lumen
TypeGO IDTermEv.Code
 biological_processGO:0000375 RNA splicing, via transesterification reactions IEA
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0006376 mRNA splice site selection IEA
 biological_processGO:0016482 cytosolic transport IEA
 biological_processGO:0043484 regulation of RNA splicing IEA
 biological_processGO:0048024 regulation of mRNA splicing, via spliceosome IEA
 biological_processGO:0048025 negative regulation of mRNA splicing, via spliceosome IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016607 nuclear speck IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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