ENSGALG00000004225


Gallus gallus

Features
Gene ID: ENSGALG00000004225
  
Biological name :KDM2B
  
Synonyms : KDM2B / lysine demethylase 2B
  
Possible biological names infered from orthology : Lysine-specific demethylase 2B / Q6P1G2 / Q8NHM5
  
Species: Gallus gallus
  
Chr. number: 15
Strand: -1
Band:
Gene start: 5516643
Gene end: 5616355
  
Corresponding Affymetrix probe sets: Gga.18697.1.S1_s_at (Chicken Array)   GgaAffx.2611.1.S1_at (Chicken Array)   GgaAffx.2611.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000006714
Ensembl peptide - ENSGALP00000049659
swissprot - A0A1D5PA99
swissprot - E1BRT8
Ensembl - ENSGALG00000004225
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 kdm2bbENSDARG00000046010Danio rerio
 KDM2BENSG00000089094Homo sapiens
 Kdm2bENSMUSG00000029475Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PHF2 / PHD finger protein 2 / O75151* / Q9WTU0* / Lysine-specific demethylase PHF2 *ENSGALG0000003920824
KDM7A / lysine demethylase 7A / Q3UWM4* / Q6ZMT4* / Lysine-specific demethylase 7A *ENSGALG0000003510819


Protein motifs (from Interpro)
Interpro ID Name
 IPR001810  F-box domain
 IPR001965  Zinc finger, PHD-type
 IPR002857  Zinc finger, CXXC-type
 IPR003347  JmjC domain
 IPR006553  Leucine-rich repeat, cysteine-containing subtype
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR019787  Zinc finger, PHD-finger
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0021555 midbrain-hindbrain boundary morphogenesis IEA
 biological_processGO:0021592 fourth ventricle development IEA
 biological_processGO:0021670 lateral ventricle development IEA
 biological_processGO:0021678 third ventricle development IEA
 biological_processGO:0021993 initiation of neural tube closure IEA
 biological_processGO:0030307 positive regulation of cell growth IEA
 biological_processGO:0030900 forebrain development IEA
 biological_processGO:0030901 midbrain development IEA
 biological_processGO:0030902 hindbrain development IEA
 biological_processGO:0035518 histone H2A monoubiquitination IEA
 biological_processGO:0043524 negative regulation of neuron apoptotic process IEA
 biological_processGO:0048596 embryonic camera-type eye morphogenesis IEA
 biological_processGO:0070544 histone H3-K36 demethylation IEA
 biological_processGO:1902459 positive regulation of stem cell population maintenance IEA
 biological_processGO:2000178 negative regulation of neural precursor cell proliferation IEA
 cellular_componentGO:0031519 PcG protein complex IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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