ENSGALG00000004587


Gallus gallus

Features
Gene ID: ENSGALG00000004587
  
Biological name :RC3H1
  
Synonyms : RC3H1 / ring finger and CCCH-type domains 1
  
Possible biological names infered from orthology : Q4VGL6 / Q5TC82 / Roquin-1
  
Species: Gallus gallus
  
Chr. number: 8
Strand: 1
Band:
Gene start: 7368421
Gene end: 7401934
  
Corresponding Affymetrix probe sets: GgaAffx.2835.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000007286
Ensembl peptide - ENSGALP00000058429
Ensembl peptide - ENSGALP00000047084
NCBI entrez gene - 424439     See in Manteia.
RefSeq - XM_015290541
RefSeq - XM_015290538
RefSeq - XM_015290539
RefSeq - XM_015290540
RefSeq - XM_015290529
RefSeq - XM_015290530
RefSeq - XM_015290531
RefSeq - XM_015290532
RefSeq - XM_015290534
RefSeq - XM_015290535
RefSeq - XM_015290536
RefSeq - XM_015290537
swissprot - E1BZI9
swissprot - A0A1D5PZL5
swissprot - A0A1D5P331
Ensembl - ENSGALG00000004587
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rc3h1aENSDARG00000062550Danio rerio
 rc3h1bENSDARG00000063182Danio rerio
 RC3H1ENSG00000135870Homo sapiens
 Rc3h1ENSMUSG00000040423Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RC3H2 / ring finger and CCCH-type domains 2 / P0C090* / Q9HBD1* / Roquin-2 *ENSGALG0000000125350


Protein motifs (from Interpro)
Interpro ID Name
 IPR000571  Zinc finger, CCCH-type
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif
 IPR032671  Roquin-1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IEA
 biological_processGO:0000956 nuclear-transcribed mRNA catabolic process IEA
 biological_processGO:0001782 B cell homeostasis IEA
 biological_processGO:0002634 regulation of germinal center formation IEA
 biological_processGO:0002635 negative regulation of germinal center formation IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0010608 posttranscriptional regulation of gene expression IEA
 biological_processGO:0030889 negative regulation of B cell proliferation IEA
 biological_processGO:0033962 cytoplasmic mRNA processing body assembly IEA
 biological_processGO:0042098 T cell proliferation IEA
 biological_processGO:0042129 regulation of T cell proliferation IEA
 biological_processGO:0043029 T cell homeostasis IEA
 biological_processGO:0043488 regulation of mRNA stability IEA
 biological_processGO:0045623 negative regulation of T-helper cell differentiation IEA
 biological_processGO:0046007 negative regulation of activated T cell proliferation IEA
 biological_processGO:0048535 lymph node development IEA
 biological_processGO:0048536 spleen development IEA
 biological_processGO:0050856 regulation of T cell receptor signaling pathway IEA
 biological_processGO:0050863 regulation of T cell activation IEA
 biological_processGO:0061014 positive regulation of mRNA catabolic process IEA
 biological_processGO:0061158 3"-UTR-mediated mRNA destabilization IEA
 biological_processGO:0061470 T follicular helper cell differentiation IEA
 biological_processGO:0071347 cellular response to interleukin-1 IEA
 biological_processGO:1901224 positive regulation of NIK/NF-kappaB signaling IEA
 cellular_componentGO:0000932 P-body IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0010494 cytoplasmic stress granule IEA
 molecular_functionGO:0003729 mRNA binding IEA
 molecular_functionGO:0003730 mRNA 3"-UTR binding IEA
 molecular_functionGO:0035613 RNA stem-loop binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr