ENSGALG00000004840


Gallus gallus

Features
Gene ID: ENSGALG00000004840
  
Biological name :RPH3A
  
Synonyms : rabphilin 3A / RPH3A
  
Possible biological names infered from orthology : P47708 / Q9Y2J0
  
Species: Gallus gallus
  
Chr. number: 15
Strand: 1
Band:
Gene start: 6490464
Gene end: 6504448
  
Corresponding Affymetrix probe sets: GgaAffx.3003.1.S1_at (Chicken Array)   GgaAffx.3003.1.S1_s_at (Chicken Array)   GgaAffx.3007.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000007715
NCBI entrez gene - 416886     See in Manteia.
RefSeq - XM_004945607
RefSeq - XM_004945609
RefSeq - XM_015275537
RefSeq - XM_015275538
RefSeq - XM_004945606
swissprot - E1BY01
Ensembl - ENSGALG00000004840
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rph3aaENSDARG00000063436Danio rerio
 rph3abENSDARG00000105490Danio rerio
 RPH3AENSG00000089169Homo sapiens
 Rph3aENSMUSG00000029608Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
DOC2B* / P70169* / double C2 domain beta* / Double C2-like domain-containing protein beta *ENSGALG0000000491737
SYTL4 / synaptotagmin like 4 / Q96C24* / Q9R0Q1*ENSGALG0000000678615
SYTL2* / Q99N50* / Q9HCH5* / synaptotagmin like 2* / Synaptotagmin-like protein 2 *ENSGALG0000000832615
SYTL5* / Q80T23* / Q8TDW5* / synaptotagmin like 5*ENSGALG0000001625814
SYTL3 / synaptotagmin like 3 / Q4VX76* / Q99N48* / Synaptotagmin-like protein 3 *ENSGALG0000001374111
ENSGALG0000003268111
SYTL5* / Q80T23* / Q8TDW5* / synaptotagmin like 5*ENSGALG000000441397


Protein motifs (from Interpro)
Interpro ID Name
 IPR000008  C2 domain
 IPR001565  Synaptotagmin
 IPR010911  Rab-binding domain
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017455  Zinc finger, FYVE-related
 IPR028698  Rabphilin-3A


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0006906 vesicle fusion IBA
 biological_processGO:0017158 regulation of calcium ion-dependent exocytosis IBA
 biological_processGO:0048791 calcium ion-regulated exocytosis of neurotransmitter IBA
 cellular_componentGO:0005886 plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0045202 synapse IEA
 cellular_componentGO:0070382 exocytic vesicle IBA
 cellular_componentGO:0098793 presynapse IEA
 molecular_functionGO:0005509 calcium ion binding IBA
 molecular_functionGO:0005544 calcium-dependent phospholipid binding IBA
 molecular_functionGO:0017137 Rab GTPase binding IEA
 molecular_functionGO:0019905 syntaxin binding IBA
 molecular_functionGO:0030276 clathrin binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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