ENSGALG00000005126


Gallus gallus

Features
Gene ID: ENSGALG00000005126
  
Biological name :DHX40
  
Synonyms : DEAH-box helicase 40 / DHX40
  
Possible biological names infered from orthology : Probable ATP-dependent RNA helicase DHX40 / Q6PE54 / Q8IX18
  
Species: Gallus gallus
  
Chr. number: 19
Strand: 1
Band:
Gene start: 7271982
Gene end: 7285527
  
Corresponding Affymetrix probe sets: Gga.1715.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000008220
NCBI entrez gene - 772090     See in Manteia.
RefSeq - XM_001235277
swissprot - F1NWM3
Ensembl - ENSGALG00000005126
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 dhx40ENSDARG00000041586Danio rerio
 DHX40ENSG00000108406Homo sapiens
 Dhx40ENSMUSG00000018425Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
DHX8 / DEAH-box helicase 8 / A2A4P0* / Q14562* / ATP-dependent RNA helicase DHX8 *ENSGALG0000003230539
DHX38 / DEAH-box helicase 38 / Q92620*ENSGALG0000000078736
DHX33 / DEAH-box helicase 33 / Q80VY9* / Q9H6R0* / Putative ATP-dependent RNA helicase DHX33 *ENSGALG0000000163035
DHX15 / pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 / O35286* / O43143* / DEAH-box helicase 15*ENSGALG0000001439535
DHX35 / DEAH-box helicase 35 / Q9H5Z1* / probable ATP-dependent RNA helicase DHX35 isoform b *ENSGALG0000000365833


Protein motifs (from Interpro)
Interpro ID Name
 IPR001650  Helicase, C-terminal
 IPR002464  DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site
 IPR003593  AAA+ ATPase domain
 IPR007502  Helicase-associated domain
 IPR011709  Domain of unknown function DUF1605
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 cellular_componentGO:0005681 spliceosomal complex IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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