ENSGALG00000005162


Gallus gallus

Features
Gene ID: ENSGALG00000005162
  
Biological name :RNPC3
  
Synonyms : RNA binding region (RNP1, RRM) containing 3 / RNPC3
  
Possible biological names infered from orthology : Q3UZ01 / Q96LT9 / RNA-binding protein 40
  
Species: Gallus gallus
  
Chr. number: 8
Strand: -1
Band:
Gene start: 11044213
Gene end: 11058808
  
Corresponding Affymetrix probe sets: Gga.4707.1.S1_at (Chicken Array)   Gga.9582.1.S1_at (Chicken Array)   Gga.9582.2.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000008278
NCBI entrez gene - 424458     See in Manteia.
RefSeq - XM_004936543
RefSeq - XM_015290803
RefSeq - XM_015290804
swissprot - F1NVY1
Ensembl - ENSGALG00000005162
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rnpc3ENSDARG00000011247Danio rerio
 RNPC3ENSG00000185946Homo sapiens
 Rnpc3ENSMUSG00000027981Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RBM41 / RNA binding motif protein 41 / Q8JZV4* / Q96IZ5* / RNA-binding protein 41 *ENSGALG0000000483217


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0032502 developmental process IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005689 U12-type spliceosomal complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0030626 U12 snRNA binding IBA
 molecular_functionGO:0097157 pre-mRNA intronic binding IBA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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