ENSGALG00000006094


Gallus gallus

Features
Gene ID: ENSGALG00000006094
  
Biological name :PHF6
  
Synonyms : PHD finger protein 6 / PHF6
  
Possible biological names infered from orthology : Q8IWS0 / Q9D4J7
  
Species: Gallus gallus
  
Chr. number: 4
Strand: 1
Band:
Gene start: 4024036
Gene end: 4039932
  
Corresponding Affymetrix probe sets: Gga.11091.1.S1_at (Chicken Array)   Gga.11091.1.S1_s_at (Chicken Array)   Gga.9611.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000009819
NCBI entrez gene - 422235     See in Manteia.
RefSeq - XM_004940662
RefSeq - XM_004940663
RefSeq - XM_420223
swissprot - E1C281
Ensembl - ENSGALG00000006094
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 phf6ENSDARG00000004046Danio rerio
 PHF6ENSG00000156531Homo sapiens
 Phf6ENSMUSG00000025626Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PHF11 / PHD finger protein 11 / Q9UIL8* / Gm6904* / A6H5X4* / Phf11a* / Phf11b* / Phf11c* / Phf11d* / Q8BVM9* / PHD finger protein 11A *ENSGALG0000001909416


Protein motifs (from Interpro)
Interpro ID Name
 IPR001965  Zinc finger, PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005730 nucleolus IEA
 molecular_functionGO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0015631 tubulin binding IEA
 molecular_functionGO:0019899 enzyme binding IEA
 molecular_functionGO:0042393 histone binding IEA
 molecular_functionGO:0042826 histone deacetylase binding IEA
 molecular_functionGO:0043021 ribonucleoprotein complex binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0051219 phosphoprotein binding IEA
 molecular_functionGO:0097110 scaffold protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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