ENSGALG00000008265


Gallus gallus
rrnasdomainssu-rrnaprocessingnucleicmaturationtricistronictranscriptlsu-rrnarnanucleolusbindinghathalf-a-tprrepeatsuppressorforkedtetratricopeptide-likehelicalsuperfamilyacid-bindingob-foldtetratricopeptiderepeat-containingrna-bindingmrnanucleussmall-subunitprocessome

Features
Gene ID: ENSGALG00000008265
  
Biological name :
  
Synonyms :
  
Possible biological names infered from orthology : PDCD11 / programmed cell death 11 / Q14690 / Q6NS46
  
Species: Gallus gallus
  
Chr. number: 6
Strand: 1
Band:
Gene start: 23612168
Gene end: 23824013
  
Corresponding Affymetrix probe sets: GgaAffx.22512.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000054340
Ensembl peptide - ENSGALP00000013431
NCBI entrez gene - 423874     See in Manteia.
RefSeq - XM_421739
RefSeq - XM_015288728
RefSeq - XM_015288729
RefSeq - XM_004942261
RefSeq - XM_015288725
RefSeq - XM_015288726
RefSeq - XM_015288727
swissprot - F1P3T9
swissprot - A0A1D5PNA1
Ensembl - ENSGALG00000008265
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pdcd11ENSDARG00000052480Danio rerio
 PDCD11ENSG00000148843Homo sapiens
 Pdcd11ENSMUSG00000025047Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003029  S1 domain
 IPR003107  HAT (Half-A-TPR) repeat
 IPR008847  Suppressor of forked
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR012340  Nucleic acid-binding, OB-fold
 IPR013026  Tetratricopeptide repeat-containing domain
 IPR022967  RNA-binding domain, S1


Gene Ontology (GO)
nitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic nitrogen compound metabolic processcellular component biogenesicellular component biogenesiscellular metabolic processcellular metabolic processprimary metabolic processprimary metabolic processorganic substance metabolic organic substance metabolic process
organic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingheterocyclic compound binding
cellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellcellorganelleorganellemembrane-enclosed lumenmembrane-enclosed lumenprotein-containing complexprotein-containing complex
TypeGO IDTermEv.Code
 biological_processGO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0006397 mRNA processing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0032040 small-subunit processome IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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