ENSGALG00000008745


Gallus gallus

Features
Gene ID: ENSGALG00000008745
  
Biological name :APLF
  
Synonyms : APLF / aprataxin and PNK-like factor
  
Possible biological names infered from orthology : aprataxin and PNKP like factor / Q8IW19 / Q9D842
  
Species: Gallus gallus
  
Chr. number: 3
Strand: 1
Band:
Gene start: 11370185
Gene end: 11391577
  
Corresponding Affymetrix probe sets: GgaAffx.5501.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000014218
NCBI entrez gene - 421264     See in Manteia.
RefSeq - NM_001287175
RefSeq - XM_419335
RefSeq Peptide - NP_001274104
swissprot - E1BU46
Ensembl - ENSGALG00000008745
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 zgc:165656ENSDARG00000096566Danio rerio
 APLFENSG00000169621Homo sapiens
 AplfENSMUSG00000030051Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000253  Forkhead-associated (FHA) domain
 IPR008984  SMAD/FHA domain superfamily
 IPR019406  Zinc finger, C2H2, APLF-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000012 single strand break repair IEA
 biological_processGO:0006302 double-strand break repair IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0045191 regulation of isotype switching IEA
 biological_processGO:0051106 positive regulation of DNA ligation IEA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0035861 site of double-strand break IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEA
 molecular_functionGO:0004520 endodeoxyribonuclease activity IEA
 molecular_functionGO:0008408 3"-5" exonuclease activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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