ENSGALG00000008847


Gallus gallus
proteintransportVPS54golgisorting-associatedretrogradevps-likevacuolarc-terminalvacuolarn-terminalvacuolelysosomalgrowthendosomehomeostasiscellswithintissuemusculoskeletalmovementneurofilamentcytoskeletonorganizationgarpcomplexnucleoplasmapparatustrans-golginetworkcytosol

Features
Gene ID: ENSGALG00000008847
  
Biological name :VPS54
  
Synonyms : VPS54 / VPS54, GARP complex subunit
  
Possible biological names infered from orthology : Q5SPW0 / Q9P1Q0
  
Species: Gallus gallus
  
Chr. number: 3
Strand: -1
Band:
Gene start: 9579065
Gene end: 9605750
  
Corresponding Affymetrix probe sets: Gga.11872.1.S1_s_at (Chicken Array)   Gga.14059.1.A1_at (Chicken Array)   Gga.1536.1.S1_at (Chicken Array)   Gga.1536.2.S1_a_at (Chicken Array)   GgaAffx.22701.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000014362
Ensembl peptide - ENSGALP00000054493
NCBI entrez gene - 421280     See in Manteia.
RefSeq - XM_419349
RefSeq - XM_015278096
swissprot - E1BRC0
swissprot - A0A1D5PNQ0
Ensembl - ENSGALG00000008847
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vps54ENSDARG00000102960Danio rerio
 VPS54ENSG00000143952Homo sapiens
 Vps54ENSMUSG00000020128Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR012501  Vps54-likeVacuolar protein sorting-associated protein 54, C-terminal
 IPR019515  Vacuolar protein sorting-associated protein 54, N-terminal


Gene Ontology (GO)
establishment of localizationcellular localizationregulation of biological qualitymulticellular organismal movementcellular component organizationintermediate filament-based processestablishment of localizationcellular localizationregulation of biological qualitymulticellular organismal movementcellular component organizationintermediate filament-based processestablishment of localizationcellular localizationregulation of biological qualitymulticellular organismal movementcellular component organizationintermediate filament-based processestablishment of localizationcellular localizationregulation of biological qualitymulticellular organismal movementcellular component organizationintermediate filament-based processestablishment of localizationcellular localizationregulation of biological qualitymulticellular organismal movementcellular component organizationintermediate filament-based processestablishment of localizationcellular localizationregulation of biological qualitymulticellular organismal movementcellular component organizationintermediate filament-based processestablishment of localizationcellular localizationregulation of biological qualitymulticellular organismal movementcellular component organizationintermediate filament-based processestablishment of localizationcellular localizationregulation of biological qualitymulticellular organismal movementcellular component organizationintermediate filament-based processestablishment of localizationcellular localizationregulation of biological qualitymulticellular organismal movementcellular component organizationintermediate filament-based processestablishment of localizationcellular localizationregulation of biological qualitymulticellular organismal movementcellular component organizationintermediate filament-based processestablishment of localiestablishment of localizationcellular localizationcellular localizationregulation of biologicaregulation of biological qualitymulticellular organismamulticellular organismal movementcellular component orgacellular component organizationintermediate filament-bintermediate filament-based process
protein bindingprotein bindingprotein bindingprotein bindingprotein bindingprotein bindingprotein bindingprotein bindingprotein bindingprotein bindingprotein bindingprotein binding
cellprotein-containing complexorganellemembrane-enclosed lumencellprotein-containing complexorganellemembrane-enclosed lumencellprotein-containing complexorganellemembrane-enclosed lumencellprotein-containing complexorganellemembrane-enclosed lumencellprotein-containing complexorganellemembrane-enclosed lumencellprotein-containing complexorganellemembrane-enclosed lumencellprotein-containing complexorganellemembrane-enclosed lumencellprotein-containing complexorganellemembrane-enclosed lumencellprotein-containing complexorganellemembrane-enclosed lumencellprotein-containing complexorganellemembrane-enclosed lumencellcellprotein-containing complexprotein-containing complexorganelleorganellemembrane-enclosed lumenmembrane-enclosed lumen
TypeGO IDTermEv.Code
 biological_processGO:0006896 Golgi to vacuole transport IBA
 biological_processGO:0007041 lysosomal transport IEA
 biological_processGO:0040007 growth IEA
 biological_processGO:0042147 retrograde transport, endosome to Golgi IEA
 biological_processGO:0048873 homeostasis of number of cells within a tissue IEA
 biological_processGO:0050881 musculoskeletal movement IEA
 biological_processGO:0060052 neurofilament cytoskeleton organization IEA
 cellular_componentGO:0000938 GARP complex IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005802 trans-Golgi network IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 molecular_functionGO:0019905 syntaxin binding IBA


Pathways (from Reactome)
Pathway description
Retrograde transport at the Trans-Golgi-Network


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000042071 VPS53 / Q5ZLD7 / Vacuolar protein sorting-associated protein 53 homolog / Q8CCB4* / Q5VIR6* / VPS53, GARP complex subunit*  / complex
 ENSGALG00000004166 VPS51 / Q5ZJ25 / Vacuolar protein sorting-associated protein 51 homolog / Tm7sf2* / Q3UVL4* / Q71KT5* / Q9UID3* / VPS51, GARP complex subunit* / transmembrane 7 superfamily member 2*  / complex






 

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