ENSGALG00000008908


Gallus gallus

Features
Gene ID: ENSGALG00000008908
  
Biological name :NEUROD1
  
Synonyms : NEUROD1 / neurogenic differentiation factor 1
  
Possible biological names infered from orthology : neuronal differentiation 1 / Q13562 / Q60867
  
Species: Gallus gallus
  
Chr. number: 7
Strand: 1
Band:
Gene start: 14310817
Gene end: 14312671
  
Corresponding Affymetrix probe sets: Gga.1840.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000014468
NCBI entrez gene - 395754     See in Manteia.
RefSeq - NM_204920
RefSeq Peptide - NP_990251
swissprot - F1NKX5
Ensembl - ENSGALG00000008908
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 O42202ENSDARG00000019566Danio rerio
 Q13562ENSG00000162992Homo sapiens
 Q60867ENSMUSG00000034701Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NEUROD4 / neurogenic differentiation factor 4 / O09105* / Q9HD90* / neuronal differentiation 4* / neurogenic differentiation 4*ENSGALG0000003430650
NEUROD2 / neuronal differentiation 2 / Q15784* / Q62414* / neurogenic differentiation 2*ENSGALG0000003963350
NEUROG1 / neurogenin 1 / P70660* / Q92886*ENSGALG0000002969218
Q7RTS1* / Q9QYC3* / BHLHA15* / basic helix-loop-helix family member a15* / Class A basic helix-loop-helix protein 15 *ENSGALG0000003130613
NEUROG3 / neurogenin 3 / P70661* / Q9Y4Z2*ENSGALG0000003481013
ATOH7 / O57598 / Protein atonal homolog 7 / 7 * / Q8N100* / Q9Z2E5* / atonal bHLH transcription factor 7*ENSGALG0000000393112
ATOH8 / protein atonal homolog 8 / 8 * / Q96SQ7* / Q99NA2* / atonal bHLH transcription factor 8*ENSGALG0000003308312


Protein motifs (from Interpro)
Interpro ID Name
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain
 IPR016637  Neurogenic differentiation factor NeuroD
 IPR022575  Neurogenic differentiation factor, domain of unknown function
 IPR032652  Neurogenic differentiation factor 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0003326 pancreatic A cell fate commitment IEA
 biological_processGO:0003329 pancreatic PP cell fate commitment IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007263 nitric oxide mediated signal transduction IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0009749 response to glucose IEA
 biological_processGO:0009952 anterior/posterior pattern specification IEA
 biological_processGO:0021542 dentate gyrus development IEA
 biological_processGO:0021549 cerebellum development IEA
 biological_processGO:0023019 signal transduction involved in regulation of gene expression IEA
 biological_processGO:0030073 insulin secretion IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0030902 hindbrain development IEA
 biological_processGO:0031018 endocrine pancreas development IEA
 biological_processGO:0035881 amacrine cell differentiation IEA
 biological_processGO:0035883 enteroendocrine cell differentiation IEA
 biological_processGO:0042593 glucose homeostasis IEA
 biological_processGO:0043010 camera-type eye development IEA
 biological_processGO:0043065 positive regulation of apoptotic process IEA
 biological_processGO:0045165 cell fate commitment IEA
 biological_processGO:0045597 positive regulation of cell differentiation IEA
 biological_processGO:0045664 regulation of neuron differentiation IEA
 biological_processGO:0045666 positive regulation of neuron differentiation IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0046426 negative regulation of JAK-STAT cascade IEA
 biological_processGO:0048562 embryonic organ morphogenesis IEA
 biological_processGO:0048666 neuron development IEA
 biological_processGO:0048839 inner ear development IEA
 biological_processGO:0051091 positive regulation of DNA-binding transcription factor activity IEA
 biological_processGO:0060730 regulation of intestinal epithelial structure maintenance IEA
 biological_processGO:0071156 regulation of cell cycle arrest IEA
 biological_processGO:2000675 negative regulation of type B pancreatic cell apoptotic process IEA
 biological_processGO:2000679 positive regulation of transcription regulatory region DNA binding IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0090575 RNA polymerase II transcription factor complex IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001102 RNA polymerase II activating transcription factor binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003713 transcription coactivator activity IEA
 molecular_functionGO:0008134 transcription factor binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA
 molecular_functionGO:0046983 protein dimerization activity IEA
 molecular_functionGO:0070888 E-box binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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