ENSGALG00000010629


Gallus gallus

Features
Gene ID: ENSGALG00000010629
  
Biological name :ZCCHC11
  
Synonyms : ZCCHC11 / zinc finger CCHC-type containing 11
  
Possible biological names infered from orthology : B2RX14 / Q5TAX3 / zinc finger, CCHC domain containing 11
  
Species: Gallus gallus
  
Chr. number: 8
Strand: -1
Band:
Gene start: 24470064
Gene end: 24511373
  
Corresponding Affymetrix probe sets: Gga.13400.1.S1_at (Chicken Array)   Gga.17600.1.S1_s_at (Chicken Array)   GgaAffx.23276.1.S1_at (Chicken Array)   GgaAffx.23276.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000017275
NCBI entrez gene - 424642     See in Manteia.
RefSeq - XM_004936791
RefSeq - XM_004936792
RefSeq - XM_015291217
RefSeq - XM_015291218
RefSeq - XM_015291219
RefSeq - XM_004936790
swissprot - E1C6A7
Ensembl - ENSGALG00000010629
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CABZ01065131.1ENSDARG00000101404Danio rerio
 zcchc11ENSDARG00000070271Danio rerio
 Q5TAX3ENSG00000134744Homo sapiens
 B2RX14ENSMUSG00000034610Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ZCCHC6 / zinc finger CCHC-type containing 6 / Q5VYS8* / zinc finger, CCHC domain containing 6*ENSGALG0000001260737
PAPD4 / poly(A) RNA polymerase D4, non-canonical / Q6PIY7* / Q91YI6* / PAP associated domain containing 4*ENSGALG000000148108
MTPAP / mitochondrial poly(A) polymerase / Q9D0D3* / Q9NVV4* / Poly(A) RNA polymerase, mitochondrial *ENSGALG000000073516


Protein motifs (from Interpro)
Interpro ID Name
 IPR001878  Zinc finger, CCHC-type
 IPR002058  PAP/25A-associated
 IPR002934  Polymerase, nucleotidyl transferase domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001816 cytokine production IEA
 biological_processGO:0010586 miRNA metabolic process IEA
 biological_processGO:0031123 RNA 3"-end processing IEA
 biological_processGO:0031664 regulation of lipopolysaccharide-mediated signaling pathway IEA
 biological_processGO:0032088 negative regulation of NF-kappaB transcription factor activity IEA
 biological_processGO:0032755 positive regulation of interleukin-6 production IEA
 biological_processGO:0070102 interleukin-6-mediated signaling pathway IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016779 nucleotidyltransferase activity IEA
 molecular_functionGO:0050265 RNA uridylyltransferase activity IEA


Pathways (from Reactome)
Pathway description
Deadenylation of mRNA


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr