ENSGALG00000010774


Gallus gallus

Features
Gene ID: ENSGALG00000010774
  
Biological name :SSBP3
  
Synonyms : Q98948 / Single-stranded DNA-binding protein 3 / SSBP3
  
Possible biological names infered from orthology : Q9BWW4 / Q9D032
  
Species: Gallus gallus
  
Chr. number: 8
Strand: -1
Band:
Gene start: 25250767
Gene end: 25301654
  
Corresponding Affymetrix probe sets: Gga.10844.1.A1_at (Chicken Array)   Gga.10844.1.S1_at (Chicken Array)   Gga.4057.1.S1_at (Chicken Array)   Gga.4057.2.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000053043
Ensembl peptide - ENSGALP00000063682
Ensembl peptide - ENSGALP00000062405
Ensembl peptide - ENSGALP00000057581
Ensembl peptide - ENSGALP00000053908
Ensembl peptide - ENSGALP00000053341
Ensembl peptide - ENSGALP00000017502
NCBI entrez gene - 395250     See in Manteia.
RefSeq - NM_204564
RefSeq - XM_015290947
RefSeq - XM_015290946
RefSeq - XM_015290945
RefSeq - XM_015290944
RefSeq - XM_015290943
RefSeq Peptide - NP_989895
swissprot - A0A1L1RUB1
swissprot - Q98948
swissprot - F1NMN5
swissprot - A0A1D5PJP7
swissprot - A0A1D5PKI3
swissprot - A0A1D5PM35
swissprot - A0A1D5PX87
Ensembl - ENSGALG00000010774
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ssbp3aENSDARG00000058237Danio rerio
 ssbp3bENSDARG00000030155Danio rerio
 SSBP3ENSG00000157216Homo sapiens
 Ssbp3ENSMUSG00000061887Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SSBP2 / single stranded DNA binding protein 2 / P81877* / Q9CYZ8*ENSGALG0000002308975


Protein motifs (from Interpro)
Interpro ID Name
 IPR006594  LIS1 homology motif
 IPR008116  Sequence-specific single-strand DNA-binding protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002244 hematopoietic progenitor cell differentiation IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0008284 positive regulation of cell proliferation IEA
 biological_processGO:0021501 prechordal plate formation IEA
 biological_processGO:0021547 midbrain-hindbrain boundary initiation IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0060322 head development IEA
 biological_processGO:0060323 head morphogenesis IEA
 biological_processGO:0065003 protein-containing complex assembly IEA
 biological_processGO:2000744 positive regulation of anterior head development IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0032991 protein-containing complex IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003697 single-stranded DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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