ENSGALG00000011652


Gallus gallus
bindingTSNtranslinrnadnafamilyn-terminalc-terminalmetabolicprocessnucleuscytoplasmsingle-strandedmrnaidenticalproteinsequence-specificsmallinterferingsirnabiogenesis

Features
Gene ID: ENSGALG00000011652
  
Biological name :TSN
  
Synonyms : translin / TSN
  
Possible biological names infered from orthology : Q15631 / Q62348
  
Species: Gallus gallus
  
Chr. number: 7
Strand: 1
Band:
Gene start: 26398352
Gene end: 26403762
  
Corresponding Affymetrix probe sets: Gga.4067.1.S1_at (Chicken Array)   Gga.4067.1.S2_at (Chicken Array)   Gga.7091.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000019018
Ensembl peptide - ENSGALP00000063234
Ensembl peptide - ENSGALP00000051946
NCBI entrez gene - 395955     See in Manteia.
RefSeq - NM_205073
RefSeq Peptide - NP_990404
swissprot - A0A1L1RWL8
swissprot - A0A1D5PGM3
swissprot - F1NT44
Ensembl - ENSGALG00000011652
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tsnENSDARG00000041830Danio rerio
 TSNENSG00000211460Homo sapiens
 TsnENSMUSG00000026374Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002848  Translin family
 IPR016068  Translin, N-terminal
 IPR016069  Translin, C-terminal


Gene Ontology (GO)
nitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processnitrogen compound metabolic processcellular metabolic processcellular metabolic processprimary metabolic processprimary metabolic processorganic substance metabolic processorganic substance metabolic process
organic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingheterocyclic compound bindingprotein bindingorganic cyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingheterocyclic compound bindingprotein bindingprotein binding
cellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellcellorganelleorganelle
TypeGO IDTermEv.Code
 biological_processGO:0016070 RNA metabolic process IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003697 single-stranded DNA binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
Small interfering RNA (siRNA) biogenesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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