ENSGALG00000011953


Gallus gallus
spliceosomePHF5Amrnasplicingunuclearphf-likevianucleoplasmsnrnp-typespliceosomalcomplexmatrixspeckprecatalyticcatalyticstep-majorpathway

Features
Gene ID: ENSGALG00000011953
  
Biological name :PHF5A
  
Synonyms : PHD finger protein 5A / PHF5A
  
Possible biological names infered from orthology : P83870 / PHD finger-like domain-containing protein 5A / Q7RTV0
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 49663357
Gene end: 49669387
  
Corresponding Affymetrix probe sets: Gga.16660.2.S1_at (Chicken Array)   Gga.16660.3.S1_at (Chicken Array)   Gga.16660.3.S1_s_at (Chicken Array)   GgaAffx.20328.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000019471
NCBI entrez gene - 417991     See in Manteia.
RefSeq - NM_001277376
RefSeq Peptide - NP_001264305
swissprot - E1BV20
Ensembl - ENSGALG00000011953
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 phf5aENSDARG00000045155Danio rerio
 PHF5AENSG00000100410Homo sapiens
 Phf5aENSMUSG00000061360Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR005345  PHF5-like


Gene Ontology (GO)
nitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processnitrogen compound metabolic processcellular metabolic processcellular metabolic processprimary metabolic processprimary metabolic processorganic substance metabolic processorganic substance metabolic process
cellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellcellorganelleorganellemembrane-enclosed lumenmembrane-enclosed lumenprotein-containing complexprotein-containing complex
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005686 U2 snRNP IEA
 cellular_componentGO:0005689 U12-type spliceosomal complex IEA
 cellular_componentGO:0016363 nuclear matrix IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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