ENSGALG00000013005


Gallus gallus

Features
Gene ID: ENSGALG00000013005
  
Biological name :SNRNP48
  
Synonyms : small nuclear ribonucleoprotein U11/U12 subunit 48 / SNRNP48
  
Possible biological names infered from orthology : Q6IEG0 / Q9D361 / U11/U12 small nuclear ribonucleoprotein 48 kDa protein
  
Species: Gallus gallus
  
Chr. number: 2
Strand: 1
Band:
Gene start: 78491436
Gene end: 78497046
  
Corresponding Affymetrix probe sets: Gga.5882.1.S1_at (Chicken Array)   GgaAffx.24093.1.S1_at (Chicken Array)   GgaAffx.24093.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000021206
Ensembl peptide - ENSGALP00000045019
NCBI entrez gene - 420925     See in Manteia.
RefSeq - XM_419010
swissprot - A0A1D5NXC4
swissprot - F1NJQ4
Ensembl - ENSGALG00000013005
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snrnp48ENSDARG00000039989Danio rerio
 Q6IEG0ENSG00000168566Homo sapiens
 Q9D361ENSMUSG00000021431Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR022776  TRM13/UPF0224 family, U11-48K-like CHHC zinc finger domain
 IPR032845  U11/U12 small nuclear ribonucleoprotein 48kDa protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005689 U12-type spliceosomal complex IEA
 cellular_componentGO:0005829 cytosol IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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