ENSGALG00000013879


Gallus gallus
rnadomainregulationstressgranulebindingTIA1recognitionmotifsplicingcytoplasmiceukaryotenucleotide-bindingalpha-betaplaitsuperfamilytranslationcytokinebiosyntheticprocessmrnaviaspliceosomeproteinlocalizationnucleusnucleoplasmcytoplasmcytosolnuclearnucleic

Features
Gene ID: ENSGALG00000013879
  
Biological name :TIA1
  
Synonyms : TIA1 / TIA1 cytotoxic granule associated RNA binding protein
  
Possible biological names infered from orthology : cytotoxic granule-associated RNA binding protein 1 / P31483 / P52912
  
Species: Gallus gallus
  
Chr. number: 22
Strand: -1
Band:
Gene start: 3565948
Gene end: 3577370
  
Corresponding Affymetrix probe sets: Gga.11001.1.S1_at (Chicken Array)   Gga.12064.1.S1_at (Chicken Array)   Gga.8269.1.S2_at (Chicken Array)   Gga.8269.2.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000054970
Ensembl peptide - ENSGALP00000022466
NCBI entrez gene - 771327     See in Manteia.
RefSeq - XM_015297483
RefSeq - NM_001257203
RefSeq Peptide - NP_001244132
swissprot - Q800W4
swissprot - A0A1D5PQ11
Ensembl - ENSGALG00000013879
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TIA1ENSG00000116001Homo sapiens
 Tia1ENSMUSG00000071337Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TIA1 / nucleolysin TIAR isoform 1 / TIAL1* / Q01085* / P70318* / TIA1 cytotoxic granule associated RNA binding protein like 1*ENSGALG0000000942777


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003954  RNA recognition motif domain, eukaryote
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
nitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcytokine productionmacromolecule localizationcellular localizationnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcytokine productionmacromolecule localizationcellular localizationnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcytokine productionmacromolecule localizationcellular localizationnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcytokine productionmacromolecule localizationcellular localizationnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcytokine productionmacromolecule localizationcellular localizationnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcytokine productionmacromolecule localizationcellular localizationnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcytokine productionmacromolecule localizationcellular localizationnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcytokine productionmacromolecule localizationcellular localizationnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcytokine productionmacromolecule localizationcellular localizationnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcytokine productionmacromolecule localizationcellular localizationnitrogen compoundnitrogen compound metabolic processbiosynthetic procbiosynthetic processcellular metabolicellular metabolic processprimary metabolicprimary metabolic processorganic substanceorganic substance metabolic processcytokine producticytokine productionmacromolecule locmacromolecule localizationcellular localizacellular localization
organic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingheterocyclic compound binding
cellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellcellorganelleorganellemembrane-enclosed lumenmembrane-enclosed lumenprotein-containing complexprotein-containing complex
TypeGO IDTermEv.Code
 biological_processGO:0017148 negative regulation of translation IEA
 biological_processGO:0042036 negative regulation of cytokine biosynthetic process IEA
 biological_processGO:0048024 regulation of mRNA splicing, via spliceosome IEA
 biological_processGO:1903608 protein localization to cytoplasmic stress granule IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0010494 cytoplasmic stress granule IEA
 cellular_componentGO:0097165 nuclear stress granule IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0017091 AU-rich element binding IEA


Pathways (from Reactome)
Pathway description
FGFR2 alternative splicing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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