ENSGALG00000015157


Gallus gallus
complexautophagyproteinassemblysitetetratricopeptide-likehelicaldomainsuperfamilytrappiiitrsergolgivesicle-mediatedtransportperoxisomelocalizationnucleuscytoplasmicvesicletrappiiirabgefsexchangegtpgdprabs

Features
Gene ID: ENSGALG00000015157
  
Biological name :
  
Synonyms :
  
Possible biological names infered from orthology : Q9Y2L5 / trafficking protein particle complex 8 / TRAPPC8
  
Species: Gallus gallus
  
Chr. number: 2
Strand: -1
Band:
Gene start: 106612010
Gene end: 106661036
  
Corresponding Affymetrix probe sets: Gga.14841.1.S1_s_at (Chicken Array)   GgaAffx.9640.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000050732
Ensembl peptide - ENSGALP00000024417
NCBI entrez gene - 421095     See in Manteia.
RefSeq - XM_015282601
RefSeq - XM_004939821
RefSeq - XM_015282600
RefSeq - XM_004939819
RefSeq - XM_004939820
swissprot - F1NU77
swissprot - A0A1D5PD88
Ensembl - ENSGALG00000015157
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trappc8ENSDARG00000038866Danio rerio
 Q9Y2L5ENSG00000153339Homo sapiens
 Trappc8ENSMUSG00000033382Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR024420  TRAPP III complex, Trs85


Gene Ontology (GO)
establishment of localizationcellular localizationcatabolic processcellular metabolic processprocess utilizing autophagic mechanismcellular component organizationmacromolecule localizationcellular component biogenesisestablishment of localizationcellular localizationcatabolic processcellular metabolic processprocess utilizing autophagic mechanismcellular component organizationmacromolecule localizationcellular component biogenesisestablishment of localizationcellular localizationcatabolic processcellular metabolic processprocess utilizing autophagic mechanismcellular component organizationmacromolecule localizationcellular component biogenesisestablishment of localizationcellular localizationcatabolic processcellular metabolic processprocess utilizing autophagic mechanismcellular component organizationmacromolecule localizationcellular component biogenesisestablishment of localizationcellular localizationcatabolic processcellular metabolic processprocess utilizing autophagic mechanismcellular component organizationmacromolecule localizationcellular component biogenesisestablishment of localizationcellular localizationcatabolic processcellular metabolic processprocess utilizing autophagic mechanismcellular component organizationmacromolecule localizationcellular component biogenesisestablishment of localizationcellular localizationcatabolic processcellular metabolic processprocess utilizing autophagic mechanismcellular component organizationmacromolecule localizationcellular component biogenesisestablishment of localizationcellular localizationcatabolic processcellular metabolic processprocess utilizing autophagic mechanismcellular component organizationmacromolecule localizationcellular component biogenesisestablishment of localizationcellular localizationcatabolic processcellular metabolic processprocess utilizing autophagic mechanismcellular component organizationmacromolecule localizationcellular component biogenesisestablishment of localizationcellular localizationcatabolic processcellular metabolic processprocess utilizing autophagic mechanismcellular component organizationmacromolecule localizationcellular component biogenesisestablishment of establishment of localizationcellular localizacellular localizationcatabolic processcatabolic processcellular metabolicellular metabolic processprocess utilizingprocess utilizing autophagic mechanismcellular componencellular component organizationmacromolecule locmacromolecule localizationcellular componencellular component biogenesis
cellorganelleprotein-containing complexcellorganelleprotein-containing complexcellorganelleprotein-containing complexcellorganelleprotein-containing complexcellorganelleprotein-containing complexcellorganelleprotein-containing complexcellorganelleprotein-containing complexcellorganelleprotein-containing complexcellorganelleprotein-containing complexcellorganelleprotein-containing complexcellcellorganelleorganelleprotein-containing complexprotein-containing complex
TypeGO IDTermEv.Code
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport IBA
 biological_processGO:0030242 autophagy of peroxisome IBA
 biological_processGO:0034497 protein localization to phagophore assembly site IBA
 biological_processGO:0044804 autophagy of nucleus IBA
 cellular_componentGO:0000407 phagophore assembly site IBA
 cellular_componentGO:0031410 cytoplasmic vesicle IBA
 cellular_componentGO:1990072 TRAPPIII protein complex IBA


Pathways (from Reactome)
Pathway description
RAB GEFs exchange GTP for GDP on RABs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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