ENSGALG00000015328


Gallus gallus

Features
Gene ID: ENSGALG00000015328
  
Biological name :TRMT10C
  
Synonyms : TRMT10C / tRNA methyltransferase 10C, mitochondrial RNase P subunit
  
Possible biological names infered from orthology : Q3UFY8 / Q7L0Y3 / tRNA methyltransferase 10 homolog C
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 85306272
Gene end: 85309277
  
Corresponding Affymetrix probe sets: Gga.5727.2.S1_a_at (Chicken Array)   Gga.5727.3.A1_at (Chicken Array)   Gga.5727.3.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000058971
Ensembl peptide - ENSGALP00000060492
Ensembl peptide - ENSGALP00000024696
Ensembl peptide - ENSGALP00000058879
NCBI entrez gene - 418397     See in Manteia.
RefSeq - XM_015297190
RefSeq - XM_015297198
RefSeq - XM_015297202
swissprot - A0A1L1RNX7
swissprot - F1NMQ4
Ensembl - ENSGALG00000015328
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trmt10cENSDARG00000041575Danio rerio
 Q7L0Y3ENSG00000174173Homo sapiens
 Q3UFY8ENSMUSG00000044763Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TRMT10A / tRNA methyltransferase 10A / Q8TBZ6*ENSGALG0000001226414
TRMT10B / tRNA methyltransferase 10B / Q6PF06* / Q9D075* / tRNA methyltransferase 10 homolog B *ENSGALG0000002911811


Protein motifs (from Interpro)
Interpro ID Name
 IPR007356  tRNA (guanine-N1-)-methyltransferase, eukaryotic
 IPR016009  tRNA methyltransferase TRMD/TRM10-type domain
 IPR025812  tRNA methyltransferase 10 homologue C
 IPR028564  tRNA methyltransferase TRM10-type domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000964 mitochondrial RNA 5"-end processing IEA
 biological_processGO:0008033 tRNA processing IEA
 biological_processGO:0070131 positive regulation of mitochondrial translation IEA
 biological_processGO:0080009 mRNA methylation IEA
 biological_processGO:0090646 mitochondrial tRNA processing IEA
 biological_processGO:0097745 mitochondrial tRNA 5"-end processing IEA
 biological_processGO:1990180 mitochondrial tRNA 3"-end processing IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005739 mitochondrion IEA
 molecular_functionGO:0000049 tRNA binding IEA
 molecular_functionGO:0009019 tRNA (guanine-N1-)-methyltransferase activity IEA
 molecular_functionGO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEA
 molecular_functionGO:0061953 mRNA (adenine-N1-)-methyltransferase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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