ENSGALG00000017011


Gallus gallus

Features
Gene ID: ENSGALG00000017011
  
Biological name :TRIM13
  
Synonyms : TRIM13 / tripartite motif containing 13
  
Possible biological names infered from orthology : E3 ubiquitin-protein ligase TRIM13 / O60858 / Q9CYB0
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 169372228
Gene end: 169377659
  
Corresponding Affymetrix probe sets: Gga.12377.1.S1_at (Chicken Array)   GgaAffx.25149.1.A1_at (Chicken Array)   GgaAffx.25149.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000027426
NCBI entrez gene - 418872     See in Manteia.
RefSeq - XM_004938721
RefSeq - XM_015276321
RefSeq - XM_015276325
swissprot - F1NV67
Ensembl - ENSGALG00000017011
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trim13ENSDARG00000010010Danio rerio
 O60858ENSG00000204977Homo sapiens
 Q9CYB0ENSMUSG00000035235Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TRIM59 / tripartite motif-containing protein 59 / Q8IWR1* / Q922Y2* / tripartite motif containing 59*ENSGALG0000002357127


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010332 response to gamma radiation IEA
 biological_processGO:0010942 positive regulation of cell death IEA
 biological_processGO:0016239 positive regulation of macroautophagy IEA
 biological_processGO:0030433 ubiquitin-dependent ERAD pathway IEA
 biological_processGO:0032897 negative regulation of viral transcription IEA
 biological_processGO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling IEA
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0045087 innate immune response IEA
 biological_processGO:0051092 positive regulation of NF-kappaB transcription factor activity IEA
 biological_processGO:0051865 protein autoubiquitination IEA
 biological_processGO:1902187 negative regulation of viral release from host cell IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0097038 perinuclear endoplasmic reticulum IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
ER Quality Control Compartment (ERQC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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