ENSGALG00000017419


Gallus gallus

Features
Gene ID: ENSGALG00000017419
  
Biological name :HPS1
  
Synonyms : HPS1 / HPS1, biogenesis of lysosomal organelles complex 3 subunit 1
  
Possible biological names infered from orthology : Mus musculus HPS1, biosis of lysosomal organelles complex 3 subunit 1 (Hps1), transcript variant 2, mRNA. / Q92902
  
Species: Gallus gallus
  
Chr. number: 6
Strand: 1
Band:
Gene start: 22233951
Gene end: 22239235
  
Corresponding Affymetrix probe sets: GgaAffx.11158.1.S1_s_at (Chicken Array)   GgaAffx.12877.1.S1_at (Chicken Array)   GgaAffx.6642.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000038767
NCBI entrez gene - 429879     See in Manteia.
RefSeq - XM_015288697
RefSeq - NM_001031580
RefSeq - XM_015288699
RefSeq Peptide - NP_001026751
swissprot - Q5ZIL0
Ensembl - ENSGALG00000017419
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hps1ENSDARG00000026170Danio rerio
 HPS1ENSG00000107521Homo sapiens
 Hps1ENSMUSG00000025188Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR026053  Hermansky-Pudlak syndrome 1 protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0065009 regulation of molecular function IEA
 biological_processGO:1903232 melanosome assembly IEA
 cellular_componentGO:0031085 BLOC-3 complex IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 molecular_functionGO:0005085 guanyl-nucleotide exchange factor activity IEA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
RAB GEFs exchange GTP for GDP on RABs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000005595 HPS4 / HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 / Q99KG7* / Q9NQG7* / Hermansky-Pudlak syndrome 4 protein homolog *  / complex
 ENSGALG00000012300 RAB32 / RAB32, member RAS oncogene family / Q13637* / Q9CZE3*  / reaction
 ENSGALG00000028018 RAB38 / RAB38, member RAS oncogene family / P57729* / Q8QZZ8*  / reaction






 

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