ENSGALG00000026761


Gallus gallus

Features
Gene ID: ENSGALG00000026761
  
Biological name :LIN28B
  
Synonyms : LIN28B / Protein lin-28 homolog B / Q45KJ4
  
Possible biological names infered from orthology : B / lin-28 homolog B / Q45KJ6 / Q6ZN17
  
Species: Gallus gallus
  
Chr. number: 3
Strand: -1
Band:
Gene start: 69096720
Gene end: 69176650
  
Corresponding Affymetrix probe sets: Gga.14055.1.S1_at (Chicken Array)   GgaAffx.20423.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000052382
Ensembl peptide - ENSGALP00000040862
NCBI entrez gene - 421786     See in Manteia.
RefSeq - XM_015284528
RefSeq - NM_001034818
RefSeq - XM_015284525
RefSeq - XM_015284527
RefSeq Peptide - NP_001029990
swissprot - A0A1D5PHV1
swissprot - Q45KJ4
Ensembl - ENSGALG00000026761
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lin28bENSDARG00000052511Danio rerio
 LIN28BENSG00000187772Homo sapiens
 B ENSMUSG00000063804Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LIN28A / protein lin-28 homolog A / A * / Q9H9Z2* / Q8K3Y3* / lin-28 homolog A*ENSGALG0000003602252


Protein motifs (from Interpro)
Interpro ID Name
 IPR001878  Zinc finger, CCHC-type
 IPR002059  Cold-shock protein, DNA-binding
 IPR011129  Cold shock domain
 IPR012340  Nucleic acid-binding, OB-fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0010587 miRNA catabolic process IEA
 biological_processGO:0031047 gene silencing by RNA IEA
 biological_processGO:0031054 pre-miRNA processing IEA
 biological_processGO:0031123 RNA 3"-end processing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr