ENSGALG00000029190


Gallus gallus
rnaMBNL1bindingsplicingzincfingerccch-typeregulationnucleusnucleoplasmcytoplasmcytosolcytoplasmicstressgranuledouble-strandedmetalion

Features
Gene ID: ENSGALG00000029190
  
Biological name :MBNL1
  
Synonyms : MBNL1 / muscleblind-like protein 1 isoform 2
  
Possible biological names infered from orthology : Muscleblind-like protein 1 / muscleblind like splicing regulator 1 / Q9JKP5 / Q9NR56
  
Species: Gallus gallus
  
Chr. number: 9
Strand: -1
Band:
Gene start: 23479986
Gene end: 23527209
  
Corresponding Affymetrix probe sets: Gga.4840.1.S1_at (Chicken Array)   GgaAffx.12068.1.S1_s_at (Chicken Array)   GgaAffx.6545.1.S1_x_at (Chicken Array)   GgaAffx.6545.4.S1_x_at (Chicken Array)   GgaAffx.6545.5.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000049174
Ensembl peptide - ENSGALP00000055150
Ensembl peptide - ENSGALP00000054130
Ensembl peptide - ENSGALP00000053764
Ensembl peptide - ENSGALP00000051256
Ensembl peptide - ENSGALP00000049883
NCBI entrez gene - 425033     See in Manteia.
RefSeq - XM_015291686
RefSeq - NM_001031322
RefSeq - NM_001163324
RefSeq - NM_001163325
RefSeq - NM_001163326
RefSeq - NM_001163327
RefSeq - XM_015291684
RefSeq Peptide - NP_001156797
RefSeq Peptide - NP_001156798
RefSeq Peptide - NP_001156799
RefSeq Peptide - NP_001026493
RefSeq Peptide - NP_001156796
swissprot - A0A1D5PMP4
swissprot - A0A1D5PLP4
swissprot - A0A1D5PEP9
swissprot - A0A1D5PAW8
swissprot - A0A1D5PQI5
swissprot - A0A1D5P8X5
Ensembl - ENSGALG00000029190
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 mbnl1ENSDARG00000052978Danio rerio
 MBNL1ENSG00000152601Homo sapiens
 Mbnl1ENSMUSG00000027763Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
MBNL2 / muscleblind-like protein 2 isoform 7 / Q5VZF2* / Q8C181* / Muscleblind-like protein 2 * / muscleblind like splicing regulator 2*ENSGALG0000001689065
MBNL3 / muscleblind-like protein 3 isoform 3 / Q8R003* / Q9NUK0* / muscleblind like splicing factor 3* / muscleblind like splicing regulator 3*ENSGALG0000003204565


Protein motifs (from Interpro)
Interpro ID Name
 IPR000571  Zinc finger, CCCH-type


Gene Ontology (GO)
nitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processnitrogen compound metabolic processcellular metabolic processcellular metabolic processprimary metabolic processprimary metabolic processorganic substance metabolic processorganic substance metabolic process
organic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingheterocyclic compound bindingion bindingion binding
cellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellcellorganelleorganellemembrane-enclosed lumenmembrane-enclosed lumenprotein-containing complexprotein-containing complex
TypeGO IDTermEv.Code
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0043484 regulation of RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0010494 cytoplasmic stress granule IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003725 double-stranded RNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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