ENSGALG00000029316


Gallus gallus
swicomplexsnf-likesubunitbafrunxariddna-bindingdomainarmadillo-likehelicalarmadillo-typefoldosac-terminalchromatinremodelingnucleussnfsuperfamily-typednabindinginteractsco-factorspreciseeffecttargetsknown

Features
Gene ID: ENSGALG00000029316
  
Biological name :
  
Synonyms :
  
Possible biological names infered from orthology : A2BH40 / ARID1A / AT-rich interaction domain 1A / AT-rich interactive domain-containing protein 1A / O14497
  
Species: Gallus gallus
  
Chr. number: 23
Strand: -1
Band:
Gene start: 33777
Gene end: 89058
  
Corresponding Affymetrix probe sets: Gga.19878.1.S1_at (Chicken Array)   Gga.4480.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000045656
Ensembl peptide - ENSGALP00000056232
NCBI entrez gene - 419542     See in Manteia.
RefSeq - XM_015297556
RefSeq - XM_015297557
RefSeq - XM_417693
swissprot - A0A1D5PTI4
swissprot - A0A1D5NZ44
Ensembl - ENSGALG00000029316
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 arid1aaENSDARG00000101710Danio rerio
 arid1abENSDARG00000101891Danio rerio
 ARID1AENSG00000117713Homo sapiens
 A2BH40ENSMUSG00000007880Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ARID1B / AT-rich interaction domain 1B / E9Q4N7* / Q8NFD5* / AT-rich interactive domain-containing protein 1B *ENSGALG0000001368348
A2BH40* / ARID1A* / O14497* / AT-rich interaction domain 1A* / AT-rich interactive domain-containing protein 1A *ENSGALG000000466599
A2BH40* / ARID1A* / O14497* / AT-rich interaction domain 1A* / AT-rich interactive domain-containing protein 1A *ENSGALG000000439368
A2BH40* / ARID1A* / O14497* / AT-rich interaction domain 1A* / AT-rich interactive domain-containing protein 1A *ENSGALG000000440018
A2BH40* / ARID1A* / O14497* / AT-rich interaction domain 1A* / AT-rich interactive domain-containing protein 1A *ENSGALG000000450308
ARID3B / AT-rich interaction domain 3B / Q8IVW6* / Q9Z1N7* / AT-rich interactive domain-containing protein 3B *ENSGALG000000013766
ARID3A / AT-rich interaction domain 3A / Q62431* / Q99856* / AT-rich interactive domain-containing protein 3A *ENSGALG000000262316
ARID3C / AT-rich interaction domain 3C / A6NKF2* / A6PWV5* / AT-rich interactive domain-containing protein 3C *ENSGALG000000058394


Protein motifs (from Interpro)
Interpro ID Name
 IPR001606  ARID DNA-binding domain
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR021906  SWI/SNF-like complex subunit BAF250/Osa
 IPR030094  SWI/SNF-like complex subunit BAF250a
 IPR033388  SWI/SNF-like complex subunit BAF250, C-terminal


Gene Ontology (GO)
cellular component organizationcellular component organizationcellular component organizationcellular component organizationcellular component organizationcellular component organizationcellular component organizationcellular component organizationcellular component organizationcellular component organizationcellular component organizationcellular component organization
organic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingheterocyclic compound binding
cellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellorganelleprotein-containing complexmembrane-enclosed lumencellcellorganelleorganelleprotein-containing complexprotein-containing complexmembrane-enclosed lumenmembrane-enclosed lumen
TypeGO IDTermEv.Code
 biological_processGO:0006338 chromatin remodeling IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0070603 SWI/SNF superfamily-type complex IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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