ENSGALG00000029918


Gallus gallus

Features
Gene ID: ENSGALG00000029918
  
Biological name :SMG5
  
Synonyms : SMG5 / SMG5, nonsense mediated mRNA decay factor
  
Possible biological names infered from orthology : Protein SMG5 / Q6ZPY2 / Q9UPR3
  
Species: Gallus gallus
  
Chr. number: 25
Strand: -1
Band:
Gene start: 21
Gene end: 24021
  
Corresponding Affymetrix probe sets: GgaAffx.22765.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000054021
Ensembl peptide - ENSGALP00000055892
NCBI entrez gene - 425473     See in Manteia.
RefSeq - XM_015298319
RefSeq - XM_015298318
swissprot - A0A1D5PSK6
swissprot - A0A1D5PME4
Ensembl - ENSGALG00000029918
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 smg5ENSDARG00000041481Danio rerio
 SMG5ENSG00000198952Homo sapiens
 Smg5ENSMUSG00000001415Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SMG6 / SMG6, nonsense mediated mRNA decay factor / P61406* / Q86US8* / Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)*ENSGALG0000000310815
SMG7 / SMG7, nonsense mediated mRNA decay factor / Q5RJH6* / Q92540* / Protein SMG7 *ENSGALG0000000466713


Protein motifs (from Interpro)
Interpro ID Name
 IPR002716  PIN domain
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR018834  DNA/RNA-binding domain, Est1-type
 IPR019458  Telomerase activating protein Est1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0032204 regulation of telomere maintenance IEA
 biological_processGO:0035303 regulation of dephosphorylation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0031625 ubiquitin protein ligase binding IEA
 molecular_functionGO:0042162 telomeric DNA binding IEA
 molecular_functionGO:0042826 histone deacetylase binding IEA
 molecular_functionGO:0051721 protein phosphatase 2A binding IEA
 molecular_functionGO:0070182 DNA polymerase binding IEA


Pathways (from Reactome)
Pathway description
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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