ENSGALG00000035482


Gallus gallus

Features
Gene ID: ENSGALG00000035482
  
Biological name :SEC24B
  
Synonyms : protein transport protein Sec24B / SEC24B
  
Possible biological names infered from orthology : O95487 / SEC24 homolog B, COPII coat complex component / Sec24 related gene family, member B (S. cerevisiae)
  
Species: Gallus gallus
  
Chr. number: 4
Strand: -1
Band:
Gene start: 37547888
Gene end: 37588666
  
Corresponding Affymetrix probe sets: Gga.3009.1.S1_s_at (Chicken Array)   GgaAffx.11620.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000050553
Ensembl peptide - ENSGALP00000057660
NCBI entrez gene - 422523     See in Manteia.
RefSeq - NM_001031135
RefSeq Peptide - NP_001026306
swissprot - A0A1D5PXG5
swissprot - A0A1D5PCR2
Ensembl - ENSGALG00000035482
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sec24bENSDARG00000071906Danio rerio
 O95487ENSG00000138802Homo sapiens
 Sec24bENSMUSG00000001052Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SEC24A / Gallus gallus SEC24 homolog A, COPII coat complex component (SEC24A), mRNA. / O95486* / Q3U2P1* / Protein transport protein Sec24A * / SEC24 homolog A, COPII coat complex component*ENSGALG0000000641752
SEC24C / SEC24 homolog C, COPII coat complex component / P53992* / Sec24 related gene family, member C (S. cerevisiae)*ENSGALG0000000518124
SEC24D / SEC24 homolog D, COPII coat complex component / O94855* / Sec24 related gene family, member D (S. cerevisiae)*ENSGALG0000001199821


Protein motifs (from Interpro)
Interpro ID Name
 IPR002035  von Willebrand factor, type A
 IPR006895  Zinc finger, Sec23/Sec24-type
 IPR006896  Sec23/Sec24, trunk domain
 IPR006900  Sec23/Sec24, helical domain
 IPR007123  Gelsolin-like domain
 IPR012990  Sec23/Sec24 beta-sandwich
 IPR029006  ADF-H/Gelsolin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001843 neural tube closure IEA
 biological_processGO:0002093 auditory receptor cell morphogenesis IEA
 biological_processGO:0003151 outflow tract morphogenesis IEA
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0021747 cochlear nucleus development IEA
 biological_processGO:0035909 aorta morphogenesis IEA
 biological_processGO:0060088 auditory receptor cell stereocilium organization IEA
 biological_processGO:0060425 lung morphogenesis IEA
 biological_processGO:0060463 lung lobe morphogenesis IEA
 biological_processGO:0060982 coronary artery morphogenesis IEA
 biological_processGO:0061156 pulmonary artery morphogenesis IEA
 biological_processGO:0072358 cardiovascular system development IEA
 biological_processGO:0090110 cargo loading into COPII-coated vesicle IEA
 biological_processGO:0090178 regulation of establishment of planar polarity involved in neural tube closure IEA
 biological_processGO:1901301 regulation of cargo loading into COPII-coated vesicle IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0030127 COPII vesicle coat IEA
 molecular_functionGO:0008270 zinc ion binding IEA


Pathways (from Reactome)
Pathway description
COPII-mediated vesicle transport
Cargo concentration in the ER
Antigen Presentation: Folding, assembly and peptide loading of class I MHC


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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