ENSGALG00000035604


Gallus gallus

Features
Gene ID: ENSGALG00000035604
  
Biological name :USB1
  
Synonyms : U6 snRNA biogenesis phosphodiesterase 1 / USB1
  
Possible biological names infered from orthology : Q9BQ65 / U6 snRNA biogenesis 1
  
Species: Gallus gallus
  
Chr. number: 11
Strand: -1
Band:
Gene start: 494984
Gene end: 498720
  
Corresponding Affymetrix probe sets: Gga.6279.3.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000046827
Ensembl peptide - ENSGALP00000063619
Ensembl peptide - ENSGALP00000057442
NCBI entrez gene - 415628     See in Manteia.
RefSeq - XM_015292316
RefSeq - XM_015292318
RefSeq - XM_015292319
RefSeq - XM_015292315
RefSeq - XM_015292317
swissprot - A0A1D5P2D2
swissprot - A0A1D5PWV3
Ensembl - ENSGALG00000035604
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 usb1ENSDARG00000003841Danio rerio
 USB1ENSG00000103005Homo sapiens
 Usb1ENSMUSG00000031792Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR027521  U6 snRNA phosphodiesterase Usb1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0034477 U6 snRNA 3"-end processing IEA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 biological_processGO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0045171 intercellular bridge IEA
 molecular_functionGO:0000175 3"-5"-exoribonuclease activity IEA
 molecular_functionGO:0004518 nuclease activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:1990838 poly(U)-specific exoribonuclease activity, producing 3" uridine cyclic phosphate ends IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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