ENSGALG00000036728


Gallus gallus

Features
Gene ID: ENSGALG00000036728
  
Biological name :PRDM16
  
Synonyms : PRDM16 / PR/SET domain 16
  
Possible biological names infered from orthology : A2A935 / PR domain zinc finger protein 16 / Q9HAZ2
  
Species: Gallus gallus
  
Chr. number: 21
Strand: -1
Band:
Gene start: 1025570
Gene end: 1224055
  
Corresponding Affymetrix probe sets: GgaAffx.693.1.S1_at (Chicken Array)   GgaAffx.694.1.S1_at (Chicken Array)   GgaAffx.698.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000050010
NCBI entrez gene - 419388     See in Manteia.
RefSeq - XM_004947378
RefSeq - XM_417551
swissprot - A0A1D5PB87
Ensembl - ENSGALG00000036728
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PRDM16ENSDARG00000078324Danio rerio
 PRDM16ENSG00000142611Homo sapiens
 A2A935ENSMUSG00000039410Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
MECOM / MDS1 and EVI1 complex locus / P14404* / Q03112*ENSGALG0000003257752
PRDM13 / PR/SET domain 13 / E9PZZ1* / Q9H4Q3* / PR domain zinc finger protein 13 *ENSGALG000000384767


Protein motifs (from Interpro)
Interpro ID Name
 IPR001214  SET domain
 IPR013087  Zinc finger C2H2-type
 IPR030413  Transcription factor hamlet


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0019827 stem cell population maintenance IEA
 biological_processGO:0022008 neurogenesis IEA
 biological_processGO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway IEA
 biological_processGO:0035019 somatic stem cell population maintenance IEA
 biological_processGO:0043457 regulation of cellular respiration IEA
 biological_processGO:0043586 tongue development IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0050872 white fat cell differentiation IEA
 biological_processGO:0050873 brown fat cell differentiation IEA
 biological_processGO:0060021 roof of mouth development IEA
 biological_processGO:0090336 positive regulation of brown fat cell differentiation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016235 aggresome IEA
 cellular_componentGO:0017053 transcriptional repressor complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003713 transcription coactivator activity IEA
 molecular_functionGO:0033613 activating transcription factor binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046332 SMAD binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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