ENSGALG00000038780


Gallus gallus

Features
Gene ID: ENSGALG00000038780
  
Biological name :PRDM2
  
Synonyms : PRDM2 / PR/SET domain 2
  
Possible biological names infered from orthology : PR domain containing 2, with ZNF domain / Q13029
  
Species: Gallus gallus
  
Chr. number: 21
Strand: -1
Band:
Gene start: 5117603
Gene end: 5169160
  
Corresponding Affymetrix probe sets: Gga.17328.1.S1_at (Chicken Array)   Gga.9151.1.S1_at (Chicken Array)   GgaAffx.2523.1.S1_at (Chicken Array)   GgaAffx.8738.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000045987
Ensembl peptide - ENSGALP00000056085
NCBI entrez gene - 419478     See in Manteia.
RefSeq - XM_015297195
RefSeq - XM_003642514
swissprot - A0A1D5PT43
swissprot - A0A1D5P015
Ensembl - ENSGALG00000038780
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 prdm2aENSDARG00000090721Danio rerio
 prdm2bENSDARG00000076451Danio rerio
 PRDM2ENSG00000116731Homo sapiens
 Prdm2ENSMUSG00000057637Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001214  SET domain
 IPR009170  Predicted retinoblastoma binding protein (RIZ)
 IPR013087  Zinc finger C2H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0008340 determination of adult lifespan IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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