ENSGALG00000041625


Gallus gallus

Features
Gene ID: ENSGALG00000041625
  
Biological name :LSM5
  
Synonyms : LSM5 / LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated
  
Possible biological names infered from orthology : P62322 / Q9Y4Y9
  
Species: Gallus gallus
  
Chr. number: 2
Strand: 1
Band:
Gene start: 48282152
Gene end: 48286922
  
Corresponding Affymetrix probe sets: Gga.1454.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000055393
Ensembl peptide - ENSGALP00000058042
NCBI entrez gene - 420751     See in Manteia.
RefSeq - NM_001302170
RefSeq - NM_001302171
RefSeq Peptide - NP_001289099
RefSeq Peptide - NP_001289100
swissprot - A0A1D5PYI7
swissprot - A0A1D5PR71
Ensembl - ENSGALG00000041625
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lsm5ENSDARG00000071573Danio rerio
 LSM5ENSG00000106355Homo sapiens
 Lsm5ENSMUSG00000091625Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
mRNA decay by 5 to 3 exoribonuclease


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr