ENSGALG00000042136


Gallus gallus

Features
Gene ID: ENSGALG00000042136
  
Biological name :PKHD1
  
Synonyms : PKHD1 / PKHD1, fibrocystin/polyductin
  
Possible biological names infered from orthology : P08F94
  
Species: Gallus gallus
  
Chr. number: 3
Strand: 1
Band:
Gene start: 108086835
Gene end: 108304491
  
Corresponding Affymetrix probe sets: Gga.11026.1.S1_at (Chicken Array)   Gga.11026.1.S1_s_at (Chicken Array)   Gga.14912.1.A1_at (Chicken Array)   Gga.14912.1.S1_s_at (Chicken Array)   Gga.15269.1.S1_at (Chicken Array)   Gga.19914.1.S1_s_at (Chicken Array)   GgaAffx.25029.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000048839
NCBI entrez gene - 422044     See in Manteia.
RefSeq - XM_015285243
swissprot - A0A1D5P7Z4
Ensembl - ENSGALG00000042136
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PKHD1ENSG00000170927Homo sapiens
 Pkhd1ENSMUSG00000043760Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CEMIP / cell migration inducing hyaluronan binding protein / Q8BI06* / Q8WUJ3* / Cell migration-inducing and hyaluronan-binding protein *ENSGALG000000064136
TMEM2* / Q5FWI3* / Q9UHN6* / transmembrane protein 2* / Cell surface hyaluronidase *ENSGALG000000151385
ENSGALG000000211715


Protein motifs (from Interpro)
Interpro ID Name
 IPR002909  IPT domain
 IPR006626  Parallel beta-helix repeat
 IPR011050  Pectin lyase fold/virulence factor
 IPR011658  PA14 domain
 IPR012334  Pectin lyase fold
 IPR013783  Immunoglobulin-like fold
 IPR014756  Immunoglobulin E-set
 IPR019316  G8 domain
 IPR028839  Fibrocystin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001822 kidney development IEA
 biological_processGO:0006874 cellular calcium ion homeostasis IEA
 biological_processGO:0008284 positive regulation of cell proliferation IEA
 biological_processGO:0010824 regulation of centrosome duplication IEA
 biological_processGO:0032006 regulation of TOR signaling IEA
 biological_processGO:0032088 negative regulation of NF-kappaB transcription factor activity IEA
 biological_processGO:0043066 negative regulation of apoptotic process IEA
 biological_processGO:0051898 negative regulation of protein kinase B signaling IEA
 biological_processGO:0060271 cilium assembly IEA
 biological_processGO:0070372 regulation of ERK1 and ERK2 cascade IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005813 centrosome IEA
 cellular_componentGO:0005929 cilium IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016324 apical plasma membrane IEA
 cellular_componentGO:0036064 ciliary basal body IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 cellular_componentGO:0072686 mitotic spindle IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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