ENSMUSG00000005687


Mus musculus

Features
Gene ID: ENSMUSG00000005687
  
Biological name :Bcas2
  
Synonyms : Bcas2 / breast carcinoma amplified sequence 2 / Q9D287
  
Possible biological names infered from orthology : BCAS2, pre-mRNA processing factor / O75934
  
Species: Mus musculus
  
Chr. number: 3
Strand: 1
Band: F2.2
Gene start: 103171655
Gene end: 103179166
  
Corresponding Affymetrix probe sets: 10494910 (MoGene1.0st)   1418234_s_at (Mouse Genome 430 2.0 Array)   1437262_x_at (Mouse Genome 430 2.0 Array)   1458219_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000116250
Ensembl peptide - ENSMUSP00000122413
Ensembl peptide - ENSMUSP00000005830
NCBI entrez gene - 68183     See in Manteia.
MGI - MGI:1915433
RefSeq - NM_026602
RefSeq - XM_006501965
RefSeq - NM_001356331
RefSeq Peptide - NP_001343260
RefSeq Peptide - NP_080878
swissprot - D6RGA5
swissprot - Q9D287
swissprot - D6RHR7
Ensembl - ENSMUSG00000005687
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 bcas2ENSDARG00000043631Danio rerio
 BCAS2ENSGALG00000002002Gallus gallus
 BCAS2ENSG00000116752Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR008409  Pre-mRNA-splicing factor SPF27


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome ISS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0000974 Prp19 complex ISS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005662 DNA replication factor A complex IEA
 cellular_componentGO:0005681 spliceosomal complex ISO
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005813 centrosome IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome IEA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001926 female infertility "inability of female to produce live offspring" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:34193]
Show

Allelic Composition: Mybpc3tm2.1Lcrr/Mybpc3+
Genetic Background: involves: 129S2/SvPasCrl * Black Swiss

 MP:0003718 maternal effect "expression of a phenotypic trait in an female animal s offspring that is dependent on the maternal genotype" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Mybpc3tm2.1Lcrr/Mybpc3+
Genetic Background: involves: 129S2/SvPasCrl * Black Swiss

 MP:0011400 complete lethality "all individuals of a given genotype in a population die before the end of the normal lifespan but time(s) of death are unspecified" [MGI:llw2]
Show

Allelic Composition: Mybpc3tm2.1Lcrr/Mybpc3+
Genetic Background: involves: 129S2/SvPasCrl * Black Swiss

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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