ENSMUSG00000018040


Mus musculus

Features
Gene ID: ENSMUSG00000018040
  
Biological name :Rrp7a
  
Synonyms : Q9D1C9 / Ribosomal RNA-processing A / Rrp7a
  
Possible biological names infered from orthology : Q9Y3A4 / ribosomal RNA processing 7 homolog A
  
Species: Mus musculus
  
Chr. number: 15
Strand: -1
Band: E1
Gene start: 83113433
Gene end: 83122801
  
Corresponding Affymetrix probe sets: 10430941 (MoGene1.0st)   1444383_at (Mouse Genome 430 2.0 Array)   1448141_at (Mouse Genome 430 2.0 Array)   1456814_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000127001
Ensembl peptide - ENSMUSP00000129142
Ensembl peptide - ENSMUSP00000128380
Ensembl peptide - ENSMUSP00000018184
NCBI entrez gene - 74778     See in Manteia.
MGI - MGI:1922028
RefSeq - NM_029101
RefSeq Peptide - NP_083377
swissprot - E9PYF0
swissprot - F6VVA3
swissprot - E9QAX0
swissprot - Q9D1C9
Ensembl - ENSMUSG00000018040
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rrp7aENSDARG00000098934Danio rerio
 RRP7AENSGALG00000011866Gallus gallus
 RRP7AENSG00000189306Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR024326  Ribosomal RNA-processing protein 7
 IPR034890  Rrp7A, RNA recognition motif
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000028 ribosomal small subunit assembly IBA
 biological_processGO:0001825 blastocyst formation IMP
 biological_processGO:0006364 rRNA processing IBA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0032545 CURI complex IBA
 cellular_componentGO:0034456 UTP-C complex IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000023971 Rrp36 / ribosomal RNA processing 36 / Q96EU6*  / complex
 ENSMUSG00000028430 Nol6 / Q8R5K4 / Nucleolar protein 6 / Q9H6R4*  / complex






 

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contact: otassy@igbmc.fr