ENSMUSG00000020096


Mus musculus

Features
Gene ID: ENSMUSG00000020096
  
Biological name :Tbata
  
Synonyms : Protein TBATA / Q7TSD4 / Tbata
  
Possible biological names infered from orthology : Q96M53 / thymus, brain and testes associated
  
Species: Mus musculus
  
Chr. number: 10
Strand: 1
Band: B4
Gene start: 61171954
Gene end: 61188841
  
Corresponding Affymetrix probe sets: 10363460 (MoGene1.0st)   1425957_x_at (Mouse Genome 430 2.0 Array)   1427130_x_at (Mouse Genome 430 2.0 Array)   1429956_at (Mouse Genome 430 2.0 Array)   1450281_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000119957
Ensembl peptide - ENSMUSP00000118942
Ensembl peptide - ENSMUSP00000151410
Ensembl peptide - ENSMUSP00000078227
Ensembl peptide - ENSMUSP00000036422
Ensembl peptide - ENSMUSP00000151940
Ensembl peptide - ENSMUSP00000151775
Ensembl peptide - ENSMUSP00000151724
Ensembl peptide - ENSMUSP00000113253
Ensembl peptide - ENSMUSP00000113902
NCBI entrez gene - 65971     See in Manteia.
MGI - MGI:1923820
RefSeq - NM_001017441
RefSeq - NM_001017407
RefSeq - NM_001017409
RefSeq - NM_001017419
RefSeq - NM_001017433
RefSeq - NM_023064
RefSeq Peptide - NP_001017407
RefSeq Peptide - NP_075551
RefSeq Peptide - NP_001017441
RefSeq Peptide - NP_001017433
RefSeq Peptide - NP_001017419
RefSeq Peptide - NP_001017409
swissprot - Q7TSD4
swissprot - A0A1W2P6T4
swissprot - A0A1W2P7K0
swissprot - A0A1W2P7P7
swissprot - A0A1W2P839
swissprot - D6RH51
swissprot - F6RYN6
swissprot - G5E8I6
Ensembl - ENSMUSG00000020096
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tbataENSDARG00000067831Danio rerio
 TBATAENSG00000166220Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR037394  Protein TBATA-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0048515 spermatid differentiation NAS
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000708 thymus hyperplasia "increased cell number in the thymus" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:33401]
Show

Allelic Composition: Ntrk2tm2Kln/Ntrk2tm2Kln,Tg(Nes-cre)1Kln/0
Genetic Background: involves: 129S2/SvPas * C57BL/6 * SJL

 MP:0000709 enlarged thymus "increased size of thymus" [J:50053]
Show

Allelic Composition: Ntrk2tm2Kln/Ntrk2tm2Kln,Tg(Nes-cre)1Kln/0
Genetic Background: involves: 129S2/SvPas * C57BL/6 * SJL

 MP:0000714 increased thymocyte number "greater than expected number of precursors to T cells" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Ntrk2tm2Kln/Ntrk2tm2Kln,Tg(Nes-cre)1Kln/0
Genetic Background: involves: 129S2/SvPas * C57BL/6 * SJL

Allelic Composition: Rag2tm1Fwa/Rag2tm1Fwa,Tbatatm1Faf/Tbatatm1Faf
Genetic Background: involves: 129P2/OlaHsd * 129S/SvEv * C57BL/6

 MP:0000872 abnormal external granule cell layer "malformation of the transient layer of the cerebellar cortex which is composed of the dividing and migrating granule cells" [tc:Teresa Chu , Mouse Genome Informatics Curator]
Show

Allelic Composition: Ntrk2tm2Kln/Ntrk2tm2Kln,Tg(Nes-cre)1Kln/0
Genetic Background: involves: 129S2/SvPas * C57BL/6 * SJL

 MP:0002145 abnormal T lymphocyte development "atypical production of or inability to produce mature T cells, and/or accumulation of T cell precursors" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Ntrk2tm2Kln/Ntrk2tm2Kln,Tg(Nes-cre)1Kln/0
Genetic Background: involves: 129S2/SvPas * C57BL/6 * SJL

 MP:0005090 increased double-negative T cells count "greater than expected numbers of the subset of T cells found in the thymus that express neither CD4 nor CD8" [Immunobiology , The Immune System in Health and Disease:ISBN 0-8153-1691-7]
Show

Allelic Composition: Ntrk2tm2Kln/Ntrk2tm2Kln,Tg(Nes-cre)1Kln/0
Genetic Background: involves: 129S2/SvPas * C57BL/6 * SJL

 MP:0009278 abnormal bone marrow cell physiology "any functional anomaly of any of the cells found in the blood" [MGI:tmeehan "Terry Meehan, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Rag2tm1Fwa/Rag2tm1Fwa,Tbatatm1Faf/Tbatatm1Faf
Genetic Background: involves: 129P2/OlaHsd * 129S/SvEv * C57BL/6

 MP:0009544 abnormal thymus epithelium morphology "any structural anomaly of the supporting framework of the thymus" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", PMID:17067941]
Show

Allelic Composition: Ntrk2tm2Kln/Ntrk2tm2Kln,Tg(Nes-cre)1Kln/0
Genetic Background: involves: 129S2/SvPas * C57BL/6 * SJL

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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