ENSMUSG00000021007


Mus musculus

Features
Gene ID: ENSMUSG00000021007
  
Biological name :Spata7
  
Synonyms : Q80VP2 / Spata7 / spermatogenesis associated 7
  
Possible biological names infered from orthology : Q9P0W8
  
Species: Mus musculus
  
Chr. number: 12
Strand: 1
Band: E
Gene start: 98628157
Gene end: 98669815
  
Corresponding Affymetrix probe sets: 10397651 (MoGene1.0st)   1437464_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000045827
Ensembl peptide - ENSMUSP00000098704
Ensembl peptide - ENSMUSP00000098705
NCBI entrez gene - 104871     See in Manteia.
MGI - MGI:2144877
RefSeq - XM_011243979
RefSeq - NM_001289572
RefSeq - NM_001289573
RefSeq - NM_001289574
RefSeq - NM_178914
RefSeq - XM_006515358
RefSeq - XM_006515361
RefSeq Peptide - NP_001276501
RefSeq Peptide - NP_001276502
RefSeq Peptide - NP_001276503
RefSeq Peptide - NP_849245
swissprot - Q80VP2
swissprot - Q3TTL3
swissprot - Q3U5D0
Ensembl - ENSMUSG00000021007
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 spata7ENSDARG00000075898Danio rerio
 SPATA7ENSGALG00000010607Gallus gallus
 Q9P0W8ENSG00000042317Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR029357  Spermatogenesis-associated protein 7


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0045494 photoreceptor cell maintenance IMP
 biological_processGO:0050896 response to stimulus IEA
 biological_processGO:1903546 protein localization to photoreceptor outer segment IMP
 biological_processGO:1903621 protein localization to photoreceptor connecting cilium IMP
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005930 axoneme IEA
 cellular_componentGO:0015630 microtubule cytoskeleton IEA
 cellular_componentGO:0032391 photoreceptor connecting cilium IDA
 cellular_componentGO:0036064 ciliary basal body IEA
 cellular_componentGO:0042995 cell projection IEA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001005 abnormal rod morphology "structural or developmental anomaly of the photoreceptors that contain rhodopsin" [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Dsptm1Efu/Dsptm1Efu,Myl2tm1(cre)Krc/Myl2+
Genetic Background: involves: 129 * 129S4/SvJae * C57BL/6

 MP:0001006 abnormal cone morphology "structural or developmental anomaly of the retinal receptors that give rise to color vision" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Dsptm1Efu/Dsptm1Efu,Myl2tm1(cre)Krc/Myl2+
Genetic Background: involves: 129 * 129S4/SvJae * C57BL/6

 MP:0004021 abnormal rod electrophysiology "anomaly in the function of dark adapted vision mediated by the rods" [smb:Susan M Bello, Mouse Genome Informatics Curator]
Show

Allelic Composition: Dsptm1Efu/Dsptm1Efu,Myl2tm1(cre)Krc/Myl2+
Genetic Background: involves: 129 * 129S4/SvJae * C57BL/6

 MP:0004022 abnormal cone electrophysiology "anomaly in the function of light adapted vision mediated by the cones" [smb:Susan M Bello, Mouse Genome Informatics Curator]
Show

Allelic Composition: Dsptm1Efu/Dsptm1Efu,Myl2tm1(cre)Krc/Myl2+
Genetic Background: involves: 129 * 129S4/SvJae * C57BL/6

 MP:0008444 retinal cone cell degeneration "a retrogressive impairment of function or destruction of one of the photoreceptor cell types in the retina, in which the photopigment is in invaginations of the cell membrane of the outer segment" [MESH:A08.663.650.650.670.100, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Dsptm1Efu/Dsptm1Efu,Myl2tm1(cre)Krc/Myl2+
Genetic Background: involves: 129 * 129S4/SvJae * C57BL/6

 MP:0008450 retinal photoreceptor degeneration "a retrogressive impairment of function or destruction of a cell specialized to detect and transduce light, including rods and cones of the retina" [MESH:A08.663.650.650, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Dsptm1Efu/Dsptm1Efu,Myl2tm1(cre)Krc/Myl2+
Genetic Background: involves: 129 * 129S4/SvJae * C57BL/6

 MP:0008451 retinal rod cell degeneration "a retrogressive impairment of function or destruction of one of the photoreceptor cell types of the vertebrate retina, in which the photopigment is in stacks of membranous disks separate from the outer cell membrane" [MESH:A08.663.650.650.670.650]
Show

Allelic Composition: Dsptm1Efu/Dsptm1Efu,Myl2tm1(cre)Krc/Myl2+
Genetic Background: involves: 129 * 129S4/SvJae * C57BL/6

 MP:0008515 thin retinal outer nuclear layer "reduced thickness of the retinal layer that contains the nuclei and cell bodies of rods and cones" [MGI:monikat "Monika Tomczuk, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Dsptm1Efu/Dsptm1Efu,Myl2tm1(cre)Krc/Myl2+
Genetic Background: involves: 129 * 129S4/SvJae * C57BL/6

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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