ENSMUSG00000025272


Mus musculus

Features
Gene ID: ENSMUSG00000025272
  
Biological name :Tro
  
Synonyms : Tro / trophinin
  
Possible biological names infered from orthology : Q12816
  
Species: Mus musculus
  
Chr. number: X
Strand: -1
Band: F3
Gene start: 150645304
Gene end: 150657583
  
Corresponding Affymetrix probe sets: 10607259 (MoGene1.0st)   1421201_a_at (Mouse Genome 430 2.0 Array)   1426016_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000108329
Ensembl peptide - ENSMUSP00000084513
Ensembl peptide - ENSMUSP00000116905
Ensembl peptide - ENSMUSP00000127689
Ensembl peptide - ENSMUSP00000126054
Ensembl peptide - ENSMUSP00000126042
Ensembl peptide - ENSMUSP00000120457
Ensembl peptide - ENSMUSP00000084508
NCBI entrez gene - 56191     See in Manteia.
MGI - MGI:1928994
RefSeq - XM_017318573
RefSeq - NM_001002272
RefSeq - NM_001290770
RefSeq - NM_001290771
RefSeq - NM_001290772
RefSeq - NM_019548
RefSeq - XM_006528916
RefSeq - XM_011247845
RefSeq - XM_011247846
RefSeq - XM_011247847
RefSeq - XM_011247848
RefSeq - XM_017318572
RefSeq Peptide - NP_001002272
RefSeq Peptide - NP_001277700
RefSeq Peptide - NP_001277701
RefSeq Peptide - NP_062421
RefSeq Peptide - NP_001277699
swissprot - E9Q098
swissprot - A2AFN3
swissprot - Q6DIC6
swissprot - E9Q886
swissprot - E9Q1Q4
swissprot - E9Q1E1
swissprot - E9Q160
Ensembl - ENSMUSG00000025272
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ndnl2ENSDARG00000058212Danio rerio
 TROENSG00000067445Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Maged2 / Mus musculus melanoma antigen, family D, 2 (Maged2), transcript variant 4, mRNA. / Q9UNF1* / MAGE family member D2*ENSMUSG0000002526814
Maged1 / Q9QYH6 / Melanoma-associated antigen D1 / Q9Y5V3* / MAGE family member D1*ENSMUSG0000002515111
Magee1 / Q6PCZ4 / Melanoma-associated antigen E1 / Q9HCI5* / MAGE family member E1*ENSMUSG000000312278
Magel2 / Q9QZ04 / MAGE-like protein 2 / Q9UJ55* / MAGE family member L2*ENSMUSG000000569727
Magee2 / MAGE family member E2 / Q8TD90*ENSMUSG000000312245
Ndn / P25233 / Necdin / Q99608* / necdin, MAGE family member*ENSMUSG000000335855
Mageb4 / A2A9R3 / Melanoma-associated antigen B4 / P43366* / MAGEB1* / MAGEB2* / O15479* / O15481* / MAGE family member B1* / MAGE family member B4* / MAGE family member B2*ENSMUSG000000354275
Magea10 / P43363* / MAGE family member A10*ENSMUSG000000434535
4933402E13Rik / RIKEN cDNA 4933402E13 geneENSMUSG000000453305
4930550L24Rik / RIKEN cDNA 4930550L24 gene / MAGEC2* / MAGEC3* / Q8TD91* / Q9UBF1* / MAGEC1* / O60732* / MAGE family member C1* / MAGE family member C2* / MAGE family member C3*ENSMUSG000000461805
Q9CWV4 / Mageb16 / Melanoma-associated antigen B16 / A2A368* / MAGE family member B16*ENSMUSG000000469425
Magea2 / P43363* / MAGEA10* / MAGE family member A10*ENSMUSG000000557465
Mageb5 / Q9BZ81* / MAGE family member B5*ENSMUSG000000613925
Mageb1 / Q8N7X4* / MAGEB6* / MAGEB6B* / MAGE family member B6* / MAGE family member B6B*ENSMUSG000000621625
Magea6 / melanoma antigen, family A, 6 / P43363* / MAGEA10* / MAGE family member A10*ENSMUSG000000637285
Gm14781 / MAGEB5* / Q9BZ81* / MAGE family member B5*ENSMUSG000000641295
Q8BQR7 / Mageb18 / Melanoma-associated antigen B18 / Q96M61* / MAGE family member B18*ENSMUSG000000676495
Nsmce3 / Q9CPR8 / Non-structural maintenance of chromosomes element 3 homolog / Q96MG7* / NSE3 homolog, SMC5-SMC6 complex component*ENSMUSG000000705205
Mageb2 / Q8N7X4* / MAGEB6* / MAGEB6B* / MAGE family member B6* / MAGE family member B6B*ENSMUSG000000730695
Mageb3 / Q8N7X4* / MAGEB6* / MAGEB6B* / MAGE family member B6* / MAGE family member B6B*ENSMUSG000000748815


Protein motifs (from Interpro)
Interpro ID Name
 IPR002190  MAGE homology domain
 IPR037445  Melanoma-associated antigen


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030308 negative regulation of cell growth IDA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005737 cytoplasm IDA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002169 no phenotype detected "normal, viable and fertile appearance and behavior; indistinguishable from controls" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Nfkbiatm1.1Pjc/Nfkbiatm1.1Pjc
Genetic Background: involves: C57BL/6

Allelic Composition: Trotm1Mfu/Y
Genetic Background: involves: 129S2/SvPas * Black Swiss

 MP:0011102 partial embryonic lethality "the appearance of lower than Mendelian ratios of organisms of a given genotype due to death of some, but not all of the organisms within the embryonic period prior to organogenesis (Mus: prior to E14)" [MGI:csmith]
Show

Allelic Composition: Trotm1Mfu/Y
Genetic Background: involves: 129S2/SvPas * Black Swiss

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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