ENSMUSG00000032518


Mus musculus

Features
Gene ID: ENSMUSG00000032518
  
Biological name :Rpsa
  
Synonyms : 40S ribosomal protein SA / P14206 / Rpsa
  
Possible biological names infered from orthology :
  
Species: Mus musculus
  
Chr. number: 9
Strand: 1
Band: F4
Gene start: 120127689
Gene end: 120132369
  
Corresponding Affymetrix probe sets: 10373569 (MoGene1.0st)   10385034 (MoGene1.0st)   10437934 (MoGene1.0st)   10502787 (MoGene1.0st)   10590253 (MoGene1.0st)   10590263 (MoGene1.0st)   10590265 (MoGene1.0st)   10590267 (MoGene1.0st)   1416196_at (Mouse Genome 430 2.0 Array)   1448245_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000148933
Ensembl peptide - ENSMUSP00000150804
Ensembl peptide - ENSMUSP00000149650
Ensembl peptide - ENSMUSP00000035105
NCBI entrez gene - 16785     See in Manteia.
MGI - MGI:105381
RefSeq - NM_011029
RefSeq Peptide - NP_035159
swissprot - A0A1L1SUK3
swissprot - A0A1L1SRW0
swissprot - P14206
Ensembl - ENSMUSG00000032518
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rpsaENSDARG00000019181Danio rerio
 RPSAENSGALG00000035079Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001865  Ribosomal protein S2
 IPR005707  Ribosomal protein S2, eukaryotic/archaeal
 IPR018130  Ribosomal protein S2, conserved site
 IPR023591  Ribosomal protein S2, flavodoxin-like domain superfamily
 IPR027498  Ribosomal protein S2, eukaryotic
 IPR027504  40S ribosomal protein SA
 IPR032281  40S ribosomal protein SA, C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000028 ribosomal small subunit assembly IBA
 biological_processGO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0000461 endonucleolytic cleavage to generate mature 3"-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0006407 rRNA export from nucleus IBA
 biological_processGO:0006412 translation IEA
 biological_processGO:0030855 epithelial cell differentiation IEA
 biological_processGO:0098609 cell-cell adhesion IEA
 cellular_componentGO:0005604 basement membrane IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0005886 plasma membrane ISO
 cellular_componentGO:0015935 small ribosomal subunit IEA
 cellular_componentGO:0016020 membrane ISO
 cellular_componentGO:0022627 cytosolic small ribosomal subunit ISO
 cellular_componentGO:0030686 90S preribosome IBA
 cellular_componentGO:0031012 extracellular matrix IEA
 cellular_componentGO:0043025 neuronal cell body IEA
 molecular_functionGO:0003735 structural constituent of ribosome IEA
 molecular_functionGO:0005055 laminin receptor activity IEA
 molecular_functionGO:0043022 ribosome binding ISO
 molecular_functionGO:0043236 laminin binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001636 irregular heartbeat "uneven timing of heart contraction" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, MGI:cls, J:33038]
Show

Allelic Composition: Lfngtm1Grid/Lfngtm1Grid,Rfngtm1Grid/Rfngtm1Grid
Genetic Background: involves: 129S1/SvImJ * C57BL/6J

 MP:0003935 abnormal craniofacial development "anomaly in the process of forming the face and/or cranium" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Eomestm1Srnr/Eomestm1Srnr,Tbx21tm1Srnr/Tbx21tm1Srnr,Tg(Cd4-cre)1Cwi/0
Genetic Background: involves: 129S1/Sv * 129X1/SvJ * C57BL/6 * DBA/2

 MP:0004201 fetal growth retardation "slow or limited development during the fetal period (sensu Mus: from E14 through birth)" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Eomestm1Srnr/Eomestm1Srnr,Tbx21tm1Srnr/Tbx21tm1Srnr,Tg(Cd4-cre)1Cwi/0
Genetic Background: involves: 129S1/Sv * 129X1/SvJ * C57BL/6 * DBA/2

 MP:0005217 abnormal pancreatic beta cell morphology "malformation of the cells of the pancreas that secrete insulin" [MeSH:National Library of Medicine - Medical Subject Headings , 2003]
Show

Allelic Composition: Eomestm1Srnr/Eomestm1Srnr,Tbx21tm1Srnr/Tbx21tm1Srnr,Tg(Cd4-cre)1Cwi/0
Genetic Background: involves: 129S1/Sv * 129X1/SvJ * C57BL/6 * DBA/2

 MP:0005642 decreased mean corpuscular hemoglobin concentration "less than the normal Hgb/Hct; the average hemoglobin concentration in a given volume of packed red cells, calculated from the hemoglobin therein and the hematocrit, in erythrocyte indices" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:8936]
Show

Allelic Composition: Eomestm1Srnr/Eomestm1Srnr,Tbx21tm1Srnr/Tbx21tm1Srnr,Tg(Cd4-cre)1Cwi/0
Genetic Background: involves: 129S1/Sv * 129X1/SvJ * C57BL/6 * DBA/2

 MP:0005648 right ventricular degeneration "replacement of cardiomyocytes in the right ventricle with fibrous tissue and/or fat" [smb:Susan M. Bello , Mouse Genome Informatics Curator, J:87868]
Show

Allelic Composition: Lfngtm1Grid/Lfngtm1Grid,Rfngtm1Grid/Rfngtm1Grid
Genetic Background: involves: 129S1/SvImJ * C57BL/6J

 MP:0011094 complete embryonic lethality before implantation "death of all organisms of a given genotype in a population between fertilization and implantation (Mus: E0 to less than E4.5)" [MGI:csmith]
Show

Allelic Composition: Eomestm1Srnr/Eomestm1Srnr,Tbx21tm1Srnr/Tbx21tm1Srnr,Tg(Cd4-cre)1Cwi/0
Genetic Background: involves: 129S1/Sv * 129X1/SvJ * C57BL/6 * DBA/2

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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