ENSMUSG00000033285


Mus musculus

Features
Gene ID: ENSMUSG00000033285
  
Biological name :Wdr3
  
Synonyms : Q8BHB4 / Wdr3 / WD repeat domain 3
  
Possible biological names infered from orthology : Q9UNX4
  
Species: Mus musculus
  
Chr. number: 3
Strand: -1
Band: F2.2
Gene start: 100138180
Gene end: 100162407
  
Corresponding Affymetrix probe sets: 10500582 (MoGene1.0st)   1433746_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000060613
Ensembl peptide - ENSMUSP00000135731
Ensembl peptide - ENSMUSP00000143010
NCBI entrez gene - 269470     See in Manteia.
MGI - MGI:2443143
RefSeq - NM_175552
RefSeq - XM_006501542
RefSeq - NM_001355657
RefSeq Peptide - NP_001342586
RefSeq Peptide - NP_780761
swissprot - H3BJD8
swissprot - Q8BHB4
swissprot - H3BLC1
Ensembl - ENSMUSG00000033285
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 wdr3ENSDARG00000011079Danio rerio
 WDR3ENSGALG00000014791Gallus gallus
 WDR3ENSG00000065183Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR007148  Small-subunit processome, Utp12
 IPR011047  Quinoprotein alcohol dehydrogenase-like superfamily
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030490 maturation of SSU-rRNA IBA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0031965 nuclear membrane IEA
 cellular_componentGO:0032040 small-subunit processome IBA
 cellular_componentGO:0034388 Pwp2p-containing subcomplex of 90S preribosome IBA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0030515 snoRNA binding IBA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0011110 partial preweaning lethality "the appearance of lower than Mendelian ratios of organisms of a given genotype due to death of some, but not all of the organisms between fertilization and weaning age (Mus: approximately 3-4 weeks of age)" [MGI:csmith]
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Allelic Composition: Smarcd2tm1.1(KOMP)Vlcg/Smarcd2+
Genetic Background: C57BL/6N-Smarcd2tm1.1(KOMP)Vlcg/Ucd

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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