ENSMUSG00000033777


Mus musculus

Features
Gene ID: ENSMUSG00000033777
  
Biological name :Tlr13
  
Synonyms : Q6R5N8 / Tlr13 / Toll-like receptor 13
  
Possible biological names infered from orthology :
  
Species: Mus musculus
  
Chr. number: X
Strand: 1
Band: D
Gene start: 106143204
Gene end: 106160493
  
Corresponding Affymetrix probe sets: 10601385 (MoGene1.0st)   1457753_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000043101
NCBI entrez gene - 279572     See in Manteia.
MGI - MGI:3045213
RefSeq - NM_205820
RefSeq Peptide - NP_991389
swissprot - Q6R5N8
Ensembl - ENSMUSG00000033777
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 senp7aENSDARG00000115136Danio rerio
 senp7aENSDARG00000109522Danio rerio
 tlr19ENSDARG00000070392Danio rerio
 tlr19ENSDARG00000026663Danio rerio
 tlr20.1ENSDARG00000115923Danio rerio
 tlr20.2ENSDARG00000088701Danio rerio
 tlr20.3ENSDARG00000092668Danio rerio
 tlr20.3ENSDARG00000114057Danio rerio
 TLR21ENSGALG00000033068Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Tlr7 / P58681 / toll-like receptor 7 / Q9NYK1*ENSMUSG0000004458323
Tlr9 / Q9EQU3 / Toll-like receptor 9 / Q9NR96* / AC097637.1*ENSMUSG0000004532223
Tlr8 / P58682 / Toll-like receptor 8 / Q9NR97*ENSMUSG0000004052222
Tlr3 / Q99MB1 / Mus musculus toll-like receptor 3 (Tlr3), transcript variant 3, mRNA. / O15455* / toll like receptor 3*ENSMUSG0000003163921
Tlr4 / Q9QUK6 / toll-like receptor 4 / O00206*ENSMUSG0000003900521
Tlr6 / toll-like receptor 6 / Q9Y2C9*ENSMUSG0000005149819
Tlr5 / toll-like receptor 5 / O60602*ENSMUSG0000007916419
Tlr2 / toll-like receptor 2 / O60603*ENSMUSG0000002799518
Tlr1 / Q9EPQ1 / toll-like receptor 1 / Q15399*ENSMUSG0000004482718
Cd180 / Q62192 / CD180 antigen / Q99467* / CD180 molecule*ENSMUSG0000002162411


Protein motifs (from Interpro)
Interpro ID Name
 IPR000157  Toll/interleukin-1 receptor homology (TIR) domain
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR025875  Leucine rich repeat 4
 IPR032675  Leucine-rich repeat domain superfamily
 IPR035897  Toll/interleukin-1 receptor homology (TIR) domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0002755 MyD88-dependent toll-like receptor signaling pathway IGI
 biological_processGO:0006954 inflammatory response IBA
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0009615 response to virus IMP
 biological_processGO:0034178 toll-like receptor 13 signaling pathway IDA
 biological_processGO:0043408 regulation of MAPK cascade IGI
 biological_processGO:0045087 innate immune response IEA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0010008 endosome membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0019843 rRNA binding IDA
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0042803 protein homodimerization activity IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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