ENSMUSG00000039376


Mus musculus
actinSynpo2lpdzcytoskeletonbindingdomainsuperfamilyregulationfilamentbundleassemblynucleusnucleoplasmcytoplasmcytosolnuclearspeckzdisccelljunctionprotein

Features
Gene ID: ENSMUSG00000039376
  
Biological name :Synpo2l
  
Synonyms : Q8BWB1 / synaptopodin 2-like / Synpo2l
  
Possible biological names infered from orthology : Q9H987
  
Species: Mus musculus
  
Chr. number: 14
Strand: -1
Band: A3
Gene start: 20658946
Gene end: 20668354
  
Corresponding Affymetrix probe sets: 10417940 (MoGene1.0st)   1428295_at (Mouse Genome 430 2.0 Array)   1447657_s_at (Mouse Genome 430 2.0 Array)   1447658_x_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000112792
Ensembl peptide - ENSMUSP00000053176
Ensembl peptide - ENSMUSP00000112760
NCBI entrez gene - 68760     See in Manteia.
MGI - MGI:1916010
RefSeq - XM_011245169
RefSeq - NM_001310431
RefSeq - NM_001310432
RefSeq - NM_175132
RefSeq - XM_006519488
RefSeq Peptide - NP_001297360
RefSeq Peptide - NP_001297361
RefSeq Peptide - NP_780341
swissprot - D3YU08
swissprot - Q8BWB1
swissprot - B2RQK7
Ensembl - ENSMUSG00000039376
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 synpo2laENSDARG00000077293Danio rerio
 synpo2lbENSDARG00000078696Danio rerio
 SYNPO2LENSGALG00000005207Gallus gallus
 Q9H987ENSG00000166317Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q91YE8 / Synpo2 / Synaptopodin-2 / Q9UMS6*ENSMUSG0000005031530
Synpo / Q8CC35 / Synaptopodin / Q8N3V7*ENSMUSG0000004307915


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR036034  PDZ superfamily


Gene Ontology (GO)
cellular component organizationcellular component biogenesisactin filament-based processcellular component organizationcellular component biogenesisactin filament-based processcellular component organizationcellular component biogenesisactin filament-based processcellular component organizationcellular component biogenesisactin filament-based processcellular component organizationcellular component biogenesisactin filament-based processcellular component organizationcellular component biogenesisactin filament-based processcellular component organizationcellular component biogenesisactin filament-based processcellular component organizationcellular component biogenesisactin filament-based processcellular component organizationcellular component biogenesisactin filament-based processcellular component organizationcellular component biogenesisactin filament-based processcellular component organizationcellular component organizationcellular component biogenesiscellular component biogenesisactin filament-based processactin filament-based process
protein bindingprotein bindingprotein bindingprotein bindingprotein bindingprotein bindingprotein bindingprotein bindingprotein bindingprotein bindingprotein bindingprotein binding
cellorganellemembrane-enclosed lumensupramolecular complexcell junctioncellorganellemembrane-enclosed lumensupramolecular complexcell junctioncellorganellemembrane-enclosed lumensupramolecular complexcell junctioncellorganellemembrane-enclosed lumensupramolecular complexcell junctioncellorganellemembrane-enclosed lumensupramolecular complexcell junctioncellorganellemembrane-enclosed lumensupramolecular complexcell junctioncellorganellemembrane-enclosed lumensupramolecular complexcell junctioncellorganellemembrane-enclosed lumensupramolecular complexcell junctioncellorganellemembrane-enclosed lumensupramolecular complexcell junctioncellorganellemembrane-enclosed lumensupramolecular complexcell junctioncellcellorganelleorganellemembrane-enclosed lumenmembrane-enclosed lumensupramolecular complexsupramolecular complexcell junctioncell junction
TypeGO IDTermEv.Code
 biological_processGO:0032233 positive regulation of actin filament bundle assembly IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0015629 actin cytoskeleton IBA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0030018 Z disc IDA
 cellular_componentGO:0030054 cell junction IEA
 molecular_functionGO:0003779 actin binding IBA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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