ENSMUSG00000041319


Mus musculus

Features
Gene ID: ENSMUSG00000041319
  
Biological name :Thoc6
  
Synonyms : Mus musculus THO complex 6 (Thoc6), transcript variant 2, mRNA. / Q5U4D9 / Thoc6
  
Possible biological names infered from orthology : Q86W42 / THO complex 6
  
Species: Mus musculus
  
Chr. number: 17
Strand: -1
Band: A3.3
Gene start: 23668614
Gene end: 23673882
  
Corresponding Affymetrix probe sets: 10448292 (MoGene1.0st)   1434827_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000111152
Ensembl peptide - ENSMUSP00000123075
Ensembl peptide - ENSMUSP00000119920
Ensembl peptide - ENSMUSP00000111153
Ensembl peptide - ENSMUSP00000038137
Ensembl peptide - ENSMUSP00000093239
NCBI entrez gene - 386612     See in Manteia.
MGI - MGI:2677480
RefSeq - XM_006524544
RefSeq - NM_001008425
RefSeq - NM_001357380
RefSeq Peptide - NP_001008425
RefSeq Peptide - NP_001344309
swissprot - D3Z132
swissprot - D3Z131
swissprot - F6S2T7
swissprot - D3YUL7
swissprot - Q5U4D9
Ensembl - ENSMUSG00000041319
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 thoc6ENSDARG00000037966Danio rerio
 THOC6ENSG00000131652Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR036322  WD40-repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006406 mRNA export from nucleus ISO
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007417 central nervous system development ISS
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0043066 negative regulation of apoptotic process ISS
 biological_processGO:0046784 viral mRNA export from host cell nucleus ISO
 biological_processGO:0051028 mRNA transport IEA
 cellular_componentGO:0000346 transcription export complex ISO
 cellular_componentGO:0000347 THO complex ISO
 cellular_componentGO:0000445 THO complex part of transcription export complex ISO
 cellular_componentGO:0000784 nuclear chromosome, telomeric region ISO
 cellular_componentGO:0005622 intracellular IBA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005654 nucleoplasm ISO
 cellular_componentGO:0016604 nuclear body ISO
 cellular_componentGO:0016607 nuclear speck ISO
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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