ENSMUSG00000047686


Mus musculus

Features
Gene ID: ENSMUSG00000047686
  
Biological name :Rtl3
  
Synonyms : Q6P1Y1 / Retrotransposon Gag-like protein 3 / Rtl3
  
Possible biological names infered from orthology : Q8N8U3 / retrotransposon Gag like 3
  
Species: Mus musculus
  
Chr. number: X
Strand: -1
Band: D
Gene start: 106837082
Gene end: 106840644
  
Corresponding Affymetrix probe sets: 10606366 (MoGene1.0st)   1437355_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000060157
NCBI entrez gene - 213436     See in Manteia.
MGI - MGI:2685221
RefSeq - NM_199468
RefSeq Peptide - NP_955762
swissprot - Q6P1Y1
Ensembl - ENSMUSG00000047686
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RTL3ENSG00000179300Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Rtl4 / Q3URY0 / Retrotransposon Gag-like protein 4 / Q6ZR62* / retrotransposon Gag like 4*ENSMUSG0000007167914


Protein motifs (from Interpro)
Interpro ID Name
 IPR001878  Zinc finger, CCHC-type
 IPR005162  Retrotransposon gag domain
 IPR032567  LDOC1-related
 IPR036875  Zinc finger, CCHC-type superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005575 cellular_component ND
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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