ENSMUSG00000047694


Mus musculus

Features
Gene ID: ENSMUSG00000047694
  
Biological name :Yipf6
  
Synonyms : Q8BR70 / Yip1 domain family, member 6 / Yipf6
  
Possible biological names infered from orthology : Q96EC8
  
Species: Mus musculus
  
Chr. number: X
Strand: 1
Band: C3
Gene start: 98936316
Gene end: 98949017
  
Corresponding Affymetrix probe sets: 10600911 (MoGene1.0st)   1430024_at (Mouse Genome 430 2.0 Array)   1441485_at (Mouse Genome 430 2.0 Array)   1455111_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000115199
Ensembl peptide - ENSMUSP00000117981
Ensembl peptide - ENSMUSP00000056039
Ensembl peptide - ENSMUSP00000109442
NCBI entrez gene - 77929     See in Manteia.
MGI - MGI:1925179
RefSeq - XM_006528337
RefSeq - XM_006528338
RefSeq - XM_006528339
RefSeq - NM_207633
RefSeq Peptide - NP_997516
swissprot - Q8BR70
swissprot - B1AV65
swissprot - B1AV66
Ensembl - ENSMUSG00000047694
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 yipf6ENSDARG00000054433Danio rerio
 YIPF6ENSGALG00000035973Gallus gallus
 YIPF6ENSG00000181704Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006977  Yip1 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0060576 intestinal epithelial cell development IMP
 cellular_componentGO:0000138 Golgi trans cisterna ISS
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005783 endoplasmic reticulum ISO
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005797 Golgi medial cisterna ISS
 cellular_componentGO:0005801 cis-Golgi network IDA
 cellular_componentGO:0005802 trans-Golgi network ISO
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030134 COPII-coated ER to Golgi transport vesicle IDA
 molecular_functionGO:0042802 identical protein binding IDA


Pathways (from Reactome)
Pathway description
Golgi Associated Vesicle Biogenesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000495 abnormal colon morphology "malformation of the portion of the large intestine between the cecum and the rectum" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Shank2tm1Mgle/Shank2+
Genetic Background: B6.129S4-Shank2tm1Mgle

Allelic Composition: Yipf6M1Btlr/Yipf6M1Btlr
Genetic Background: C57BL/6J-Yipf6M1Btlr/Mmucd

 MP:0000496 abnormal small intestine morphology "structural or developmental anomalies of the intestinum tenue " [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Shank2tm1Mgle/Shank2+
Genetic Background: B6.129S4-Shank2tm1Mgle

Allelic Composition: Yipf6M1Btlr/Yipf6M1Btlr
Genetic Background: C57BL/6J-Yipf6M1Btlr/Mmucd

 MP:0002816 colitis "local accumulation of fluid, plasma proteins, and leukocytes in the colon region of the large intestine" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8]
Show

Allelic Composition: Shank2tm1Mgle/Shank2+
Genetic Background: B6.129S4-Shank2tm1Mgle

Allelic Composition: Yipf6M1Btlr/Yipf6M1Btlr
Genetic Background: C57BL/6J-Yipf6M1Btlr/Mmucd

 MP:0003449 abnormal intestinal goblet cells "malformation of the unicellular mucin-secreting glands" [smb:Susan M Bello, Mouse Genome Informatics Curator, J:95282]
Show

Allelic Composition: Shank2tm1Mgle/Shank2+
Genetic Background: B6.129S4-Shank2tm1Mgle

Allelic Composition: Yipf6M1Btlr/Yipf6M1Btlr
Genetic Background: C57BL/6J-Yipf6M1Btlr/Mmucd

 MP:0004843 abnormal Paneth cell morphology "any structural anomaly of the large secretory cells containing coarse granules found at the base of the crypts of Lieberkuhn in the small intestine" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Shank2tm1Mgle/Shank2+
Genetic Background: B6.129S4-Shank2tm1Mgle

Allelic Composition: Yipf6M1Btlr/Yipf6M1Btlr
Genetic Background: C57BL/6J-Yipf6M1Btlr/Mmucd

 MP:0008537 increased susceptibility to induced colitis "increased severity or induction threshold of colitis upon treatment of an organism with intestinal inflammation agents such as dextran sodium sulfate (DSS)" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Shank2tm1Mgle/Shank2+
Genetic Background: B6.129S4-Shank2tm1Mgle

Allelic Composition: Yipf6M1Btlr/Yipf6M1Btlr
Genetic Background: C57BL/6J-Yipf6M1Btlr/Mmucd

 MP:0009146 abnormal pancreatic acinar cell morphology "any structural anomaly of the secretory cells of the exocrine pancreas that produce fluid containing digestive enzymes" [ISBN:0-683-40008-8 "Stedman s Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Shank2tm1Mgle/Shank2+
Genetic Background: B6.129S4-Shank2tm1Mgle

Allelic Composition: Yipf6M1Btlr/Yipf6M1Btlr
Genetic Background: C57BL/6J-Yipf6M1Btlr/Mmucd

 MP:0009766 increased sensitivity to xenobiotic induced morbidity/mortality "decrease in the amount of a foreign compound required to cause death or diseased state" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Shank2tm1Mgle/Shank2+
Genetic Background: B6.129S4-Shank2tm1Mgle

Allelic Composition: Yipf6M1Btlr/Yipf6M1Btlr
Genetic Background: C57BL/6J-Yipf6M1Btlr/Mmucd

 MP:0010180 increased susceptibility to weight loss "greater decrease in body weight over time when compared to the average decrease in weight in response to dietary modification, fasting or caloric restriction" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Shank2tm1Mgle/Shank2+
Genetic Background: B6.129S4-Shank2tm1Mgle

Allelic Composition: Yipf6M1Btlr/Yipf6M1Btlr
Genetic Background: C57BL/6J-Yipf6M1Btlr/Mmucd

 MP:0013486 decreased Paneth cell number "fewer than normal numbers of the large secretory cells containing coarse granules found at the base of the crypts of Lieberkuhn in the small intestine" [MGI:Anna]
Show

Allelic Composition: Shank2tm1Mgle/Shank2+
Genetic Background: B6.129S4-Shank2tm1Mgle

Allelic Composition: Yipf6M1Btlr/Yipf6M1Btlr
Genetic Background: C57BL/6J-Yipf6M1Btlr/Mmucd

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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