ENSMUSG00000047963


Mus musculus

Features
Gene ID: ENSMUSG00000047963
  
Biological name :Stbd1
  
Synonyms : Q8C7E7 / starch binding domain 1 / Stbd1
  
Possible biological names infered from orthology : O95210
  
Species: Mus musculus
  
Chr. number: 5
Strand: 1
Band: E2
Gene start: 92603041
Gene end: 92606579
  
Corresponding Affymetrix probe sets: 10523255 (MoGene1.0st)   1434442_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000144305
Ensembl peptide - ENSMUSP00000144467
Ensembl peptide - ENSMUSP00000054322
NCBI entrez gene - 52331     See in Manteia.
MGI - MGI:1261768
RefSeq - NM_175096
RefSeq Peptide - NP_780305
swissprot - A0A0J9YUR6
swissprot - Q8C7E7
Ensembl - ENSMUSG00000047963
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 stbd1ENSDARG00000098408Danio rerio
 ENSGALG00000027872Gallus gallus
 STBD1ENSG00000118804Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002044  Carbohydrate binding module family 20
 IPR013783  Immunoglobulin-like fold
 IPR013784  Carbohydrate-binding-like fold
 IPR034838  Starch-binding domain-containing protein 1, CBM20 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0005975 carbohydrate metabolic process IEA
 biological_processGO:0005977 glycogen metabolic process IEA
 biological_processGO:0005980 glycogen catabolic process IEA
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0046907 intracellular transport IGI
 biological_processGO:0061723 glycophagy IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005783 endoplasmic reticulum ISO
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005887 integral component of plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030315 T-tubule IEA
 cellular_componentGO:0034045 phagophore assembly site membrane IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 molecular_functionGO:0019899 enzyme binding IEA
 molecular_functionGO:0030246 carbohydrate binding IEA
 molecular_functionGO:0030247 polysaccharide binding IEA
 molecular_functionGO:2001069 glycogen binding ISO
 molecular_functionGO:2001070 starch binding IEA


Pathways (from Reactome)
Pathway description
Neutrophil degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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