ENSMUSG00000052477


Mus musculus

Features
Gene ID: ENSMUSG00000052477
  
Biological name :C130026I21Rik
  
Synonyms : C130026I21Rik / RIKEN cDNA C130026I21 gene
  
Possible biological names infered from orthology : Q13342 / SP140 / SP140 nuclear body protein
  
Species: Mus musculus
  
Chr. number: 1
Strand: -1
Band: C5
Gene start: 84992690
Gene end: 85270566
  
Corresponding Affymetrix probe sets: 10356248 (MoGene1.0st)   1429562_at (Mouse Genome 430 2.0 Array)   1429563_x_at (Mouse Genome 430 2.0 Array)   1435660_at (Mouse Genome 430 2.0 Array)   1456635_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000125160
Ensembl peptide - ENSMUSP00000124435
Ensembl peptide - ENSMUSP00000125170
Ensembl peptide - ENSMUSP00000125215
Ensembl peptide - ENSMUSP00000066587
Ensembl peptide - ENSMUSP00000091224
NCBI entrez gene - 620078     See in Manteia.
MGI - MGI:3612702
RefSeq - XM_017321885
RefSeq - NM_175219
RefSeq - XM_006496512
RefSeq - XM_006496519
RefSeq - XM_017321879
RefSeq - XM_017321880
RefSeq - XM_017321881
RefSeq - XM_017321882
RefSeq - XM_017321884
RefSeq - NM_001037909
RefSeq Peptide - NP_780428
RefSeq Peptide - NP_001032998
swissprot - E0CXN9
swissprot - Q8C898
swissprot - E0CXL1
swissprot - E0CY74
swissprot - Q3KNJ6
swissprot - F7D3Q7
Ensembl - ENSMUSG00000052477
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sp100.1ENSDARG00000055359Danio rerio
 sp100.2ENSDARG00000102588Danio rerio
 sp100.3ENSDARG00000090449Danio rerio
 SP140ENSG00000079263Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Sp140 / Sp140 nuclear body protein / Q13342*ENSMUSG0000007003150
A530032D15Rik / RIKEN cDNA A530032D15Rik gene / SP140* / Q13342* / SP140 nuclear body protein*ENSMUSG0000008984444
Sp100 / O35892 / nuclear antigen Sp100 / Q9H930* / P23497* / SP140L* / SP100 nuclear antigen* / SP140 nuclear body protein like*ENSMUSG0000002622222
Sp110 / Q8BVK9 / Sp110 nuclear body protein / Q9HB58*ENSMUSG0000007003420
A630001G21Rik / RIKEN cDNA A630001G21 geneENSMUSG0000005276017


Protein motifs (from Interpro)
Interpro ID Name
 IPR004865  HSR domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005575 cellular_component ND
 cellular_componentGO:0005634 nucleus IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr