ENSMUSG00000056296


Mus musculus

Features
Gene ID: ENSMUSG00000056296
  
Biological name :Synpr
  
Synonyms : Q8BGN8 / Synaptoporin / Synpr
  
Possible biological names infered from orthology : Q8TBG9
  
Species: Mus musculus
  
Chr. number: 14
Strand: 1
Band: A1
Gene start: 13284780
Gene end: 13616340
  
Corresponding Affymetrix probe sets: 10412719 (MoGene1.0st)   1423640_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000108275
Ensembl peptide - ENSMUSP00000153361
Ensembl peptide - ENSMUSP00000116342
Ensembl peptide - ENSMUSP00000064986
NCBI entrez gene - 72003     See in Manteia.
MGI - MGI:1919253
RefSeq - NM_001163032
RefSeq - NM_028052
RefSeq Peptide - NP_001156504
RefSeq Peptide - NP_082328
swissprot - Q8BGN8
swissprot - A0A286YDB6
swissprot - D3Z5Q8
Ensembl - ENSMUSG00000056296
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 synprENSDARG00000044278Danio rerio
 SYNPRENSDARG00000037587Danio rerio
 SYNPRENSGALG00000007284Gallus gallus
 SYNPRENSG00000163630Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Syp / Q62277 / Synaptophysin / P08247*ENSMUSG0000003114458
Sypl2 / O89104 / Synaptophysin-like protein 2 / Q5VXT5* / synaptophysin like 2*ENSMUSG0000002788740
Sypl / O09117 / synaptophysin-like protein / SYPL1* / Q16563* / synaptophysin like 1*ENSMUSG0000002057039


Protein motifs (from Interpro)
Interpro ID Name
 IPR001285  Synaptophysin/synaptoporin
 IPR008253  Marvel domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0008021 synaptic vesicle IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030285 integral component of synaptic vesicle membrane TAS
 cellular_componentGO:0030672 synaptic vesicle membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0043005 neuron projection IEA
 cellular_componentGO:0045202 synapse IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002064 seizures "sudden and often acute manifestation of epileptic attack, sometimes convulsive" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: En1tm1Alj/En1tm8.1Alj,En2tm1Alj/En2tm6Alj,Gt(ROSA)26Sortm1(cre/ERT2)Alj/Gt(ROSA)26Sor+
Genetic Background: involves: 129S2/SvPas * 129S6/SvEvTac * Swiss Webster

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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