ENSMUSG00000067367


Mus musculus
regulationLyarzincfingerchdna-templatedbindinglyar-typesuperfamilyrnapolymeraseiirrnaprocessingerythrocytedevelopmentphagocytosisphotoreceptoroutersegmentnucleusnucleoluscytoplasmcellprojectiondnametalion

Features
Gene ID: ENSMUSG00000067367
  
Biological name :Lyar
  
Synonyms : Cell growth-regulating nucleolar protein / Lyar / Q08288
  
Possible biological names infered from orthology : Ly1 antibody reactive / Q9NX58
  
Species: Mus musculus
  
Chr. number: 5
Strand: 1
Band: B3
Gene start: 38220470
Gene end: 38234306
  
Corresponding Affymetrix probe sets: 10521555 (MoGene1.0st)   1417511_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000114506
Ensembl peptide - ENSMUSP00000144609
Ensembl peptide - ENSMUSP00000122486
Ensembl peptide - ENSMUSP00000122153
Ensembl peptide - ENSMUSP00000121320
Ensembl peptide - ENSMUSP00000121204
Ensembl peptide - ENSMUSP00000118337
Ensembl peptide - ENSMUSP00000118035
Ensembl peptide - ENSMUSP00000084791
Ensembl peptide - ENSMUSP00000109741
NCBI entrez gene - 17089     See in Manteia.
MGI - MGI:107470
RefSeq - XM_006503766
RefSeq - XM_006503765
RefSeq - XM_006503764
RefSeq - XM_006503763
RefSeq - XM_006503762
RefSeq - XM_006503761
RefSeq - NM_025281
RefSeq - XM_006503759
RefSeq - XM_006503760
RefSeq Peptide - NP_079557
swissprot - Q08288
swissprot - D6RDT2
swissprot - A0A0J9YVD4
swissprot - D3YU83
swissprot - D3Z009
swissprot - D3Z345
swissprot - D3Z5X8
swissprot - D3Z7N3
Ensembl - ENSMUSG00000067367
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lyarENSDARG00000098507Danio rerio
 LYARENSGALG00000015000Gallus gallus
 LYARENSG00000145220Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR014898  Zinc finger, C2H2, LYAR-type
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
nitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component biogenesisregulation of biological qualityanatomical structure developmentcellular developmental processcellular component organizationestablishment of localizationnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component biogenesisregulation of biological qualityanatomical structure developmentcellular developmental processcellular component organizationestablishment of localizationnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component biogenesisregulation of biological qualityanatomical structure developmentcellular developmental processcellular component organizationestablishment of localizationnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component biogenesisregulation of biological qualityanatomical structure developmentcellular developmental processcellular component organizationestablishment of localizationnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component biogenesisregulation of biological qualityanatomical structure developmentcellular developmental processcellular component organizationestablishment of localizationnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component biogenesisregulation of biological qualityanatomical structure developmentcellular developmental processcellular component organizationestablishment of localizationnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component biogenesisregulation of biological qualityanatomical structure developmentcellular developmental processcellular component organizationestablishment of localizationnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component biogenesisregulation of biological qualityanatomical structure developmentcellular developmental processcellular component organizationestablishment of localizationnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component biogenesisregulation of biological qualityanatomical structure developmentcellular developmental processcellular component organizationestablishment of localizationnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component biogenesisregulation of biological qualityanatomical structure developmentcellular developmental processcellular component organizationestablishment of localizationnitrogen comnitrogen compound metabolic processbiosyntheticbiosynthetic processcellular metcellular metabolic processprimary metaprimary metabolic processorganic subsorganic substance metabolic processcellular comcellular component biogenesisregulation oregulation of biological qualityanatomical sanatomical structure developmentcellular devcellular developmental processcellular comcellular component organizationestablishmenestablishment of localization
organic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingheterocyclic compound bindingion bindingion binding
cellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellorganellemembrane-enclosed lumencellcellorganelleorganellemembrane-enclosed lumenmembrane-enclosed lumen
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IMP
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006364 rRNA processing ISO
 biological_processGO:0048821 erythrocyte development ISS
 biological_processGO:0050766 positive regulation of phagocytosis IDA
 cellular_componentGO:0001750 photoreceptor outer segment IEA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005730 nucleolus ISS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0042995 cell projection IEA
 molecular_functionGO:0003677 DNA binding ISO
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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