ENSMUSG00000068823


Mus musculus
bindingCsde1cold-shockdomainnucleicmrnamembraneproteindna-bindingcoldshockacid-bindingob-foldconservedsitesuz-cregulationtranscriptiondna-templatednuclear-transcribedcatabolicprocessno-godecaycytoplasmmitochondrialinnergolgiapparatuscytosolplasma

Features
Gene ID: ENSMUSG00000068823
  
Biological name :Csde1
  
Synonyms : Cold shock domain-containing protein E1 / Csde1 / Q91W50
  
Possible biological names infered from orthology : cold shock domain containing E1 / O75534
  
Species: Mus musculus
  
Chr. number: 3
Strand: 1
Band: F2.2
Gene start: 103020426
Gene end: 103058186
  
Corresponding Affymetrix probe sets: 10494839 (MoGene1.0st)   1423997_at (Mouse Genome 430 2.0 Array)   1427396_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000143028
Ensembl peptide - ENSMUSP00000143050
Ensembl peptide - ENSMUSP00000143524
Ensembl peptide - ENSMUSP00000143503
Ensembl peptide - ENSMUSP00000029446
Ensembl peptide - ENSMUSP00000142395
Ensembl peptide - ENSMUSP00000142647
Ensembl peptide - ENSMUSP00000142703
Ensembl peptide - ENSMUSP00000142983
NCBI entrez gene - 229663     See in Manteia.
MGI - MGI:92356
RefSeq - XM_006501399
RefSeq - XM_006501398
RefSeq - XM_006501397
RefSeq - NM_001161854
RefSeq - NM_001310693
RefSeq - NM_144901
RefSeq - XM_017319550
RefSeq Peptide - NP_659150
RefSeq Peptide - NP_001155326
RefSeq Peptide - NP_001297622
swissprot - Q8JZN2
swissprot - Q91W50
swissprot - Q3U1S6
swissprot - A0A0G2JF72
swissprot - A0A0G2JDJ7
swissprot - A0A0G2JE62
Ensembl - ENSMUSG00000068823
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 csde1ENSDARG00000074758Danio rerio
 CSDE1ENSGALG00000002139Gallus gallus
 CSDE1ENSG00000009307Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002059  Cold-shock protein, DNA-binding
 IPR011129  Cold shock domain
 IPR012340  Nucleic acid-binding, OB-fold
 IPR019844  Cold-shock conserved site
 IPR024642  SUZ-C domain


Gene Ontology (GO)
nitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcatabolic processnitrogen compound metabnitrogen compound metabolic processbiosynthetic processbiosynthetic processcellular metabolic proccellular metabolic processprimary metabolic proceprimary metabolic processorganic substance metaborganic substance metabolic processcatabolic processcatabolic process
organic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingheterocyclic compound binding
cellmembraneorganelleprotein-containing complexcellmembraneorganelleprotein-containing complexcellmembraneorganelleprotein-containing complexcellmembraneorganelleprotein-containing complexcellmembraneorganelleprotein-containing complexcellmembraneorganelleprotein-containing complexcellmembraneorganelleprotein-containing complexcellmembraneorganelleprotein-containing complexcellmembraneorganelleprotein-containing complexcellmembraneorganelleprotein-containing complexcellcellmembranemembraneorganelleorganelleprotein-containing complexprotein-containing complex
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0070966 nuclear-transcribed mRNA catabolic process, no-go decay ISO
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005743 mitochondrial inner membrane IDA
 cellular_componentGO:0005794 Golgi apparatus ISO
 cellular_componentGO:0005829 cytosol ISO
 cellular_componentGO:0005886 plasma membrane ISO
 cellular_componentGO:0070937 CRD-mediated mRNA stability complex ISO
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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