ENSMUSG00000078452


Mus musculus

Features
Gene ID: ENSMUSG00000078452
  
Biological name :Raet1d
  
Synonyms : Mus musculus retinoic acid early transcript beta (Raet1b), mRNA. / Q9JI58 / Raet1d
  
Possible biological names infered from orthology :
  
Species: Mus musculus
  
Chr. number: 10
Strand: 1
Band: A3
Gene start: 22360552
Gene end: 22374139
  
Corresponding Affymetrix probe sets: 10362091 (MoGene1.0st)   10608634 (MoGene1.0st)   10608648 (MoGene1.0st)   10608661 (MoGene1.0st)   1420603_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000093471
Ensembl peptide - ENSMUSP00000138328
NCBI entrez gene - 56554     See in Manteia.
NCBI entrez gene - 19369     See in Manteia.
NCBI entrez gene - 19368     See in Manteia.
NCBI entrez gene - 19370     See in Manteia.
MGI - MGI:1861032
RefSeq - XM_006512808
RefSeq - NM_009016
RefSeq - NM_009017
RefSeq - NM_009018
RefSeq - NM_020030
RefSeq Peptide - NP_033043
RefSeq Peptide - NP_033044
RefSeq Peptide - NP_064414
RefSeq Peptide - NP_033042
swissprot - Q9JI58
Ensembl - ENSMUSG00000078452
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9CZQ6 / Raet1e / Retinoic acid early-inducible protein 1-epsilon ENSMUSG0000005321990
H60b / B1B212 / Histocompatibility antigen 60b ENSMUSG0000007529722
H60c / B1B213 / Histocompatibility antigen 60c ENSMUSG0000009161817


Protein motifs (from Interpro)
Interpro ID Name
 IPR011162  MHC classes I/II-like antigen recognition protein
 IPR029287  Retinoic acid early-inducible protein 1
 IPR037055  MHC class I-like antigen recognition-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001913 T cell mediated cytotoxicity IBA
 biological_processGO:0042267 natural killer cell mediated cytotoxicity IDA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0009897 external side of plasma membrane IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031225 anchored component of membrane IEA
 cellular_componentGO:0046658 anchored component of plasma membrane IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0046703 natural killer cell lectin-like receptor binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0003080 competent NK cell cytolysis "ability of these cells to destroy or dissolve targeted cells" [RGD:Rat Genome Database submission]
Show

Allelic Composition: GnaqM1J/Gnaq+
Genetic Background: C57BL/6J-GnaqM1J/GrsrJ

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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